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MT325768.1__QJI52503.1__X__00206
Bact-VirMT325768.1__QJI52503.1__X__00206
Identity
- Accession:
- MT325768 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-98
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.70 | 57.0 | 5.98e-01 | 86.4% | 100.0% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.70 | 51.0 | 4.83e-01 | 93.8% | 65.3% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 39.0 | 3.69e-01 | 93.8% | 65.3% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.50 | 36.0 | 2.81e-01 | 77.8% | 85.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.85 | 56.0 | 6.80e-01 | 88.9% | 100.0% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.80 | 55.0 | 6.20e-01 | 91.4% | 95.0% |
| 5030835 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.74 | 63.0 | 6.26e-01 | 91.4% | 91.8% |
| 5075574 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 61.0 | 6.18e-01 | 88.9% | 93.8% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.67 | 52.0 | 4.71e-01 | 100.0% | 62.4% |
| 3283905 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.57 | 42.0 | 4.47e-01 | 84.0% | 94.2% |
| 4943444 | 1.1.7.145 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EFG_III | 0.57 | 41.0 | 3.52e-01 | 93.8% | 47.7% |
| 4612383 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.54 | 38.0 | 3.06e-01 | 74.1% | 90.0% |
| 4322679 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.53 | 39.0 | 3.31e-01 | 93.8% | 47.4% |
D2
high
residues 103-173
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.73 | 56.0 | 5.06e-01 | 100.0% | 61.1% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 43.0 | 4.99e-01 | 100.0% | 97.9% |
| 2zpaA03 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 40.0 | 2.83e-01 | 100.0% | 20.6% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 34.0 | 3.45e-01 | 85.9% | 53.4% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.61 | 36.0 | 3.83e-01 | 98.6% | 67.7% |
| 4ntwB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.61 | 31.0 | 3.38e-01 | 71.8% | 57.6% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 43.0 | 3.35e-01 | 77.5% | 38.2% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 35.0 | 3.72e-01 | 80.3% | 66.1% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.57 | 44.0 | 3.86e-01 | 100.0% | 55.2% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 3.70e-01 | 88.7% | 61.3% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 42.0 | 3.38e-01 | 98.6% | 40.8% |
| 2kcrA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.56 | 30.0 | 3.27e-01 | 73.2% | 60.7% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.66e-01 | 100.0% | 77.6% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.55 | 30.0 | 3.39e-01 | 73.2% | 68.5% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.34e-01 | 71.8% | 72.0% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.54 | 48.0 | 4.78e-01 | 98.6% | 100.0% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.54 | 47.0 | 4.67e-01 | 98.6% | 100.0% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.20e-01 | 76.1% | 76.6% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 43.0 | 3.47e-01 | 100.0% | 61.5% |
| 4ia5A02 | 3.30.9.80 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.51 | 41.0 | 3.36e-01 | 100.0% | 45.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4006572 | 171.1.1.12 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › PF28438 | 0.71 | 52.0 | 5.46e-01 | 78.9% | 93.8% |
| 4662939 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.71 | 53.0 | 5.36e-01 | 80.3% | 88.6% |
| 4548024 | 1.1.17.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Mycop_pep_DUF31 | 0.70 | 49.0 | 3.00e-01 | 100.0% | 12.0% |
| 4151528 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.69 | 48.0 | 5.28e-01 | 73.2% | 100.0% |
| 3965634 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.68 | 51.0 | 5.25e-01 | 80.3% | 100.0% |
| 5012955 | 1.1.7.128 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 | 0.67 | 53.0 | 4.98e-01 | 100.0% | 70.6% |
| 5013322 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.67 | 48.0 | 4.89e-01 | 100.0% | 77.1% |
| 3941676 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.66 | 54.0 | 5.49e-01 | 91.5% | 91.4% |
| 3163907 | 221.1.1.220 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF28438 | 0.66 | 54.0 | 5.45e-01 | 91.5% | 91.4% |
| 4007969 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.65 | 47.0 | 4.79e-01 | 78.9% | 90.0% |
| 3954764 | 316.1.1.68 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF28438 | 0.64 | 53.0 | 5.20e-01 | 91.5% | 85.3% |
| 4295284 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.64 | 52.0 | 5.20e-01 | 91.5% | 85.3% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.62 | 52.0 | 5.39e-01 | 98.6% | 100.0% |
| 4331397 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.62 | 47.0 | 4.53e-01 | 100.0% | 71.2% |
| 4381510 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 46.0 | 4.27e-01 | 100.0% | 63.4% |
| 4178396 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 46.0 | 4.31e-01 | 100.0% | 65.6% |
| 3970513 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.58 | 43.0 | 4.07e-01 | 100.0% | 65.9% |
| 3973637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 4.05e-01 | 100.0% | 61.0% |
| 3517847 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.57 | 31.0 | 3.26e-01 | 73.2% | 57.8% |
| 3411290 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.56 | 48.0 | 4.03e-01 | 100.0% | 88.5% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.56 | 48.0 | 4.86e-01 | 100.0% | 97.1% |
| 3965903 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 36.0 | 3.11e-01 | 100.0% | 40.0% |
| 4151877 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.53 | 45.0 | 3.99e-01 | 100.0% | 63.8% |
| 5054413 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.53 | 46.0 | 4.12e-01 | 98.6% | 75.7% |
| 4616814 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.53 | 44.0 | 3.95e-01 | 100.0% | 66.0% |
| 3385835 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.53 | 46.0 | 4.50e-01 | 100.0% | 95.0% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.52 | 45.0 | 4.40e-01 | 100.0% | 92.3% |
| 3581421 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 40.0 | 2.34e-01 | 85.9% | 9.5% |
| 3275563 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.51 | 44.0 | 3.01e-01 | 100.0% | 37.2% |
| 3502307 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 2.88e-01 | 76.1% | 53.3% |