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MT354569.1__QOC57947.1__phiK7B1_092__00092

Bact-Vir

MT354569.1__QOC57947.1__phiK7B1_092__00092

Identity

Accession:
MT354569 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nickievirus› Pseudomonas_phage_phiK7B1

TaxID: 2755401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.62 54.0 3.88e-01 100.0% 42.4%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 46.0 2.88e-01 88.2% 53.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.58 42.0 4.48e-01 79.4% 100.0%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 45.0 4.07e-01 100.0% 62.4%
1xv2D02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 48.0 4.11e-01 100.0% 83.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.51e-01 100.0% 94.4%
4bt2A02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 47.0 4.03e-01 100.0% 83.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.52e-01 91.2% 93.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 3.77e-01 98.5% 45.7%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.77e-01 100.0% 91.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.47e-01 88.2% 93.5%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.72e-01 76.5% 71.0%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.47e-01 88.2% 75.5%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 46.0 3.88e-01 100.0% 84.6%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 43.0 3.77e-01 97.1% 67.0%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 44.0 3.86e-01 100.0% 97.3%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.48e-01 94.1% 63.7%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 44.0 3.88e-01 100.0% 98.1%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.46e-01 97.1% 73.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.08e-01 98.5% 80.7%
1ym0A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.60e-01 100.0% 68.3%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 43.0 3.86e-01 100.0% 91.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.79e-01 100.0% 85.9%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.58 49.0 4.84e-01 97.1% 89.2%
3914762 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 45.0 3.94e-01 86.8% 83.8%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 5.03e-01 98.5% 100.0%
3191269 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 49.0 4.90e-01 98.5% 98.6%
3408299 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.57 46.0 4.06e-01 88.2% 91.0%
3517415 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.57 46.0 4.70e-01 98.5% 95.4%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 44.0 4.39e-01 86.8% 100.0%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.56 48.0 4.43e-01 98.5% 78.9%
3294049 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.56 44.0 3.33e-01 86.8% 69.4%
3738626 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 48.0 3.85e-01 100.0% 57.2%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 49.0 4.76e-01 100.0% 96.0%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.46e-01 100.0% 91.8%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 48.0 3.86e-01 100.0% 52.1%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.55 46.0 4.09e-01 100.0% 86.4%
3633294 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.55 44.0 3.59e-01 91.2% 53.6%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 48.0 4.38e-01 100.0% 71.6%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.55 46.0 4.08e-01 100.0% 86.4%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 48.0 4.16e-01 100.0% 68.5%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 48.0 4.20e-01 100.0% 69.5%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 47.0 3.64e-01 95.6% 96.0%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 47.0 3.34e-01 100.0% 31.7%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 47.0 4.20e-01 100.0% 68.0%
3846015 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 46.0 3.16e-01 100.0% 63.0%
4055974 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.54 45.0 3.81e-01 100.0% 76.8%
3218475 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.53 45.0 3.85e-01 98.5% 68.3%
3422764 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.53 37.0 4.15e-01 79.4% 100.0%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.15e-01 100.0% 75.8%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 4.08e-01 83.8% 94.5%
3838341 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.53 44.0 2.83e-01 94.1% 85.6%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 44.0 3.89e-01 100.0% 63.6%
2549178 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.52 42.0 3.62e-01 91.2% 70.8%
3 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.52 42.0 3.69e-01 97.1% 67.8%
3917376 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.51 43.0 4.30e-01 97.1% 98.6%
3727439 220.1.1.54 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 0.50 37.0 3.00e-01 80.9% 71.0%