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MT361768.1__QKW95362.1__X__00030

Bact-Vir

MT361768.1__QKW95362.1__X__00030

Identity

Accession:
MT361768 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gervaisevirus› Ralstonia_phage_RPZH6

TaxID: 2736195

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-47
PDB
Domain cluster: representative
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.74 53.0 3.01e-01 100.0% 7.1%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.70 50.0 4.16e-01 100.0% 42.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 64.0 5.48e-01 100.0% 72.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 63.0 5.39e-01 100.0% 71.2%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.19e-01 100.0% 82.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.43e-01 100.0% 94.5%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.68 53.0 4.54e-01 100.0% 51.3%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 53.0 3.11e-01 100.0% 10.8%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.65 54.0 4.33e-01 100.0% 69.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.27e-01 95.3% 93.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 3.62e-01 100.0% 33.7%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 52.0 4.06e-01 100.0% 45.9%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 43.0 3.56e-01 97.7% 36.0%
3myxB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 3.46e-01 100.0% 28.7%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 3.91e-01 100.0% 51.3%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.48e-01 100.0% 87.5%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 4.77e-01 100.0% 76.5%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 47.0 3.65e-01 100.0% 36.4%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 44.0 2.73e-01 81.4% 53.4%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 54.0 4.86e-01 100.0% 91.9%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.62 53.0 4.74e-01 100.0% 92.2%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 44.0 2.80e-01 81.4% 38.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 4.27e-01 100.0% 92.4%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.62 52.0 4.51e-01 100.0% 81.9%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 3.50e-01 97.7% 39.1%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 49.0 3.90e-01 100.0% 90.0%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 51.0 3.53e-01 100.0% 74.1%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 48.0 3.26e-01 95.3% 28.1%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 49.0 3.97e-01 100.0% 55.2%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.72e-01 100.0% 45.3%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 50.0 3.55e-01 97.7% 35.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.87e-01 100.0% 47.1%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 3.79e-01 100.0% 59.6%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 51.0 3.77e-01 100.0% 43.6%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 46.0 3.15e-01 100.0% 23.9%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 50.0 4.58e-01 97.7% 100.0%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.88e-01 100.0% 92.8%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 46.0 3.74e-01 97.7% 78.7%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.59e-01 100.0% 42.1%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.13e-01 100.0% 68.2%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.97e-01 100.0% 53.2%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 3.76e-01 100.0% 90.4%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 3.30e-01 100.0% 30.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 49.0 3.50e-01 100.0% 39.7%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.47e-01 97.7% 56.9%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 44.0 3.21e-01 100.0% 30.8%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.55 44.0 2.96e-01 100.0% 22.4%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 42.0 3.37e-01 100.0% 77.4%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.97e-01 100.0% 56.2%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.54 39.0 2.82e-01 83.7% 65.4%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.49e-01 97.7% 52.6%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 49.0 3.51e-01 100.0% 49.6%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.54 44.0 3.47e-01 100.0% 51.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 42.0 3.51e-01 100.0% 55.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.50e-01 97.7% 50.0%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 2.95e-01 100.0% 22.0%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.17e-01 100.0% 38.1%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 45.0 3.36e-01 100.0% 40.4%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.47e-01 100.0% 69.4%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.46e-01 100.0% 59.6%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 47.0 3.40e-01 100.0% 56.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 44.0 4.07e-01 100.0% 72.9%
1mkiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 3.02e-01 100.0% 73.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 40.0 2.88e-01 100.0% 45.5%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.02e-01 100.0% 77.2%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 40.0 3.00e-01 100.0% 32.3%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 42.0 3.20e-01 100.0% 45.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 2.87e-01 100.0% 27.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.74 62.0 6.15e-01 97.7% 97.8%
4009311 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.74 61.0 5.49e-01 100.0% 66.2%
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.73 61.0 5.94e-01 100.0% 90.0%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.72 58.0 5.84e-01 100.0% 100.0%
3942988 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.71 59.0 5.29e-01 100.0% 66.2%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 63.0 4.84e-01 100.0% 52.2%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 63.0 5.14e-01 100.0% 62.7%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 57.0 5.53e-01 100.0% 88.0%
3975705 3115.6.1.0 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.69 57.0 5.53e-01 100.0% 86.0%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.68 56.0 5.62e-01 100.0% 97.8%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 55.0 5.53e-01 100.0% 97.8%
5070182 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 48.0 4.79e-01 100.0% 73.3%
3227025 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 56.0 5.07e-01 97.7% 96.7%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.66e-01 95.3% 100.0%
3415617 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.65 52.0 5.02e-01 100.0% 80.0%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 51.0 4.99e-01 100.0% 90.0%
4978421 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.64 54.0 4.00e-01 100.0% 59.2%
None — 0.62 55.0 3.44e-01 100.0% 27.4%
4383356 3615.1.1.49 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Dynamin_N 0.62 50.0 2.80e-01 97.7% 6.2%
6198 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.62 49.0 3.91e-01 100.0% 90.8%
5029617 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.61 52.0 4.55e-01 97.7% 80.0%
4972138 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.61 53.0 3.96e-01 97.7% 61.9%
5046788 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 52.0 3.84e-01 100.0% 36.7%
3354546 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.61 52.0 3.56e-01 100.0% 35.8%
4135543 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.61 47.0 3.65e-01 97.7% 88.2%
3412052 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 49.0 4.53e-01 100.0% 71.7%
3502158 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 47.0 3.40e-01 100.0% 55.5%
3404255 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.59 49.0 4.73e-01 100.0% 86.0%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.59 51.0 3.62e-01 100.0% 33.3%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.58 42.0 2.55e-01 79.1% 22.1%
4961379 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.58 46.0 3.06e-01 100.0% 20.9%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.58 50.0 4.52e-01 100.0% 96.7%
3404175 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 47.0 4.43e-01 100.0% 76.4%
146929 3115.3.1.1 ↗ a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.57 47.0 4.47e-01 100.0% 80.4%
3572172 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 48.0 3.44e-01 97.7% 32.4%
4461643 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.56 42.0 4.00e-01 100.0% 68.3%
4282521 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.56 47.0 3.40e-01 100.0% 49.6%
3618240 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 47.0 3.69e-01 100.0% 76.0%
3504725 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 43.0 2.51e-01 90.7% 31.8%
5037556 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 47.0 2.99e-01 100.0% 73.9%
3260848 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 47.0 3.19e-01 100.0% 34.3%
3791793 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.55 45.0 3.68e-01 95.3% 90.6%
3405674 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.53 41.0 3.95e-01 100.0% 76.4%
3924084 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.27e-01 95.3% 100.0%
163858 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 40.0 3.11e-01 100.0% 86.5%
1514578 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.52 44.0 3.05e-01 100.0% 39.0%
5040885 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.13e-01 97.7% 45.2%