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MT361972.1__QJS52944.1__phiAb1151011551_00063__00063

Bact-Vir

MT361972.1__QJS52944.1__phiAb1151011551_00063__00063

Identity

Accession:
MT361972 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vieuvirus› Acinetobacter_phage_Ab11510-phi

TaxID: 2735531

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-124
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 35.0 3.25e-01 93.6% 41.0%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.63 36.0 4.23e-01 97.4% 91.3%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.63 30.0 3.24e-01 85.9% 50.0%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 37.0 2.76e-01 73.1% 24.3%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 35.0 3.19e-01 96.2% 43.0%
5hwtB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 33.0 2.95e-01 100.0% 38.5%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 31.0 2.52e-01 100.0% 26.1%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 33.0 2.62e-01 93.6% 30.6%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.53 32.0 2.63e-01 94.9% 33.1%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 31.0 2.78e-01 97.4% 38.4%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 3.03e-01 92.3% 53.7%
1fohA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.98e-01 93.6% 96.0%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.79e-01 100.0% 28.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3397976 913.1.1.0 ↗ few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) 0.71 36.0 3.69e-01 89.7% 49.3%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 35.0 3.27e-01 85.9% 38.9%
3203065 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.69 36.0 3.04e-01 97.4% 28.9%
4403908 4.1.1.291 ↗ beta barrels › SH3 › SH3 › SH3 › YNQ4_N 0.68 35.0 4.31e-01 100.0% 84.4%
3936054 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.64 39.0 3.46e-01 100.0% 41.8%
3788703 59.1.2.2 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Ydr279_N 0.62 33.0 3.34e-01 100.0% 47.5%
3927984 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 37.0 3.18e-01 92.3% 38.3%
5042696 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.60 37.0 3.39e-01 100.0% 43.6%
3996024 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.59 37.0 3.01e-01 92.3% 33.3%
3752543 7.1.1.17 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ, PDZ_6 0.59 39.0 3.52e-01 96.2% 48.2%
None — 0.57 44.0 2.51e-01 83.3% 8.0%
3784974 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.56 37.0 2.76e-01 100.0% 24.8%
4009415 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.54 37.0 3.23e-01 70.5% 78.3%
3356382 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.54 48.0 3.36e-01 100.0% 96.9%
4580935 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.54 41.0 2.56e-01 83.3% 84.1%
3678985 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.53 38.0 3.54e-01 96.2% 59.0%
3597379 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 32.0 2.87e-01 98.7% 40.9%
3775621 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.53 32.0 2.86e-01 100.0% 40.0%
4594258 3281.1.1.2 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.52 46.0 2.72e-01 97.4% 55.9%
4065107 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.52 43.0 2.54e-01 88.5% 14.1%
3333319 5090.1.1.7 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.52 39.0 2.59e-01 84.6% 86.7%
2323986 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.51 39.0 2.64e-01 84.6% 20.3%
3952888 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.51 29.0 2.35e-01 100.0% 24.7%