Back to structures

MT362618.1__QJT70392.1__X__00031

Bact-Vir

MT362618.1__QJT70392.1__X__00031

Identity

Accession:
MT362618 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26372.1 best DUF8096 91.4 3.10e-26 97.7% 97.7%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 50.0 4.96e-01 75.0% 73.9%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.70 52.0 3.69e-01 81.8% 26.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 43.0 3.86e-01 79.5% 43.8%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 46.0 3.60e-01 79.5% 48.2%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.65 48.0 4.29e-01 77.3% 54.8%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 53.0 3.89e-01 100.0% 35.5%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 48.0 4.04e-01 84.1% 58.1%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.62 52.0 3.33e-01 100.0% 19.2%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.43e-01 95.5% 49.7%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 39.0 3.62e-01 84.1% 48.3%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.61 50.0 3.23e-01 100.0% 18.2%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.60 41.0 3.64e-01 75.0% 45.1%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.60 47.0 3.92e-01 97.7% 71.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.58 37.0 3.22e-01 72.7% 39.7%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 39.0 2.88e-01 72.7% 29.4%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.85e-01 88.6% 35.6%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 43.0 3.29e-01 90.9% 71.5%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.71e-01 81.8% 24.5%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.56 39.0 3.44e-01 75.0% 50.0%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 35.0 3.00e-01 72.7% 32.5%
4d90A02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.56 34.0 2.85e-01 72.7% 30.2%
2kb3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 39.0 2.85e-01 75.0% 58.3%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 37.0 2.63e-01 72.7% 18.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 38.0 3.57e-01 75.0% 57.1%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 42.0 3.72e-01 90.9% 95.9%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.61e-01 97.7% 68.2%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 42.0 3.19e-01 93.2% 64.6%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.53 38.0 3.02e-01 93.2% 34.0%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.53 43.0 3.40e-01 100.0% 49.5%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.72e-01 93.2% 63.5%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 3.62e-01 93.2% 61.3%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.51 33.0 2.72e-01 77.3% 28.0%
1px5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 35.0 2.57e-01 75.0% 67.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.21e-01 100.0% 50.8%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 38.0 3.06e-01 88.6% 83.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.16e-01 100.0% 48.5%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.51e-01 70.5% 26.2%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4276264 375.8.1.5 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.95 87.0 8.65e-01 97.7% 95.6%
4438701 375.1.1.272 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 0.93 87.0 8.32e-01 100.0% 89.8%
3595832 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.85 60.0 5.54e-01 75.0% 63.6%
3612107 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.83 60.0 5.38e-01 77.3% 60.0%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.83 58.0 5.85e-01 75.0% 75.0%
5004736 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 60.0 5.45e-01 77.3% 58.6%
5084051 375.8.1.7 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › TRAM 0.81 57.0 6.06e-01 75.0% 100.0%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.80 56.0 5.85e-01 75.0% 89.7%
3503021 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.80 56.0 6.01e-01 75.0% 100.0%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.79 56.0 4.34e-01 77.3% 36.0%
3208301 66.1.1.3 beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.79 57.0 4.12e-01 77.3% 30.0%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.79 55.0 5.16e-01 75.0% 63.6%
3967552 375.1.1.71 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.78 55.0 5.47e-01 75.0% 75.6%
4927544 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 54.0 5.85e-01 75.0% 91.4%
3482645 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.78 54.0 5.75e-01 75.0% 94.3%
4932308 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.77 54.0 5.79e-01 75.0% 97.1%
4369866 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.77 58.0 6.09e-01 81.8% 92.5%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 53.0 5.11e-01 72.7% 64.0%
4119222 375.1.1.135 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.77 54.0 5.23e-01 75.0% 66.0%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.75 52.0 4.82e-01 75.0% 58.2%
3910652 66.1.1.3 beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.75 54.0 4.03e-01 77.3% 32.7%
5061081 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.74 50.0 4.90e-01 75.0% 64.0%
4947252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 51.0 5.08e-01 75.0% 71.1%
3838045 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 50.0 5.46e-01 75.0% 91.4%
5058552 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.72 49.0 4.80e-01 75.0% 64.0%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.72 50.0 4.00e-01 75.0% 37.8%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 50.0 4.71e-01 75.0% 61.8%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 48.0 4.65e-01 72.7% 62.0%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.71 50.0 4.67e-01 75.0% 61.8%
3064081 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.71 50.0 4.66e-01 77.3% 62.1%
3670700 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 49.0 5.09e-01 75.0% 85.0%
5061079 4294.1.1.13 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.71 48.0 4.82e-01 75.0% 71.1%
3585826 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 5.11e-01 75.0% 95.0%
4942956 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.70 48.0 4.66e-01 75.0% 64.0%
3233358 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 3.69e-01 75.0% 44.5%
4854353 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.70 47.0 4.45e-01 70.5% 60.4%
4289796 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.69 49.0 4.38e-01 77.3% 53.8%
5051764 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.69 49.0 3.39e-01 75.0% 21.3%
4865239 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.68 48.0 4.97e-01 77.3% 89.7%
4982858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 54.0 3.93e-01 93.2% 48.9%
3365759 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 40.0 4.23e-01 72.7% 65.0%
3704121 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.67 52.0 4.82e-01 88.6% 72.4%
4027519 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.66 44.0 4.77e-01 70.5% 85.7%
4888728 5.1.2.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.66 46.0 2.83e-01 75.0% 13.6%
3312712 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 39.0 3.78e-01 72.7% 50.0%
4937577 375.1.1.53 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.66 46.0 4.86e-01 81.8% 94.3%
3594759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 4.50e-01 75.0% 90.0%
5061790 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 49.0 4.93e-01 90.9% 86.7%
4954874 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 52.0 4.44e-01 95.5% 68.0%
3666644 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 39.0 4.17e-01 75.0% 77.1%
3331838 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 37.0 3.62e-01 72.7% 52.0%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 4.19e-01 75.0% 66.0%
4049910 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.61 45.0 4.50e-01 86.4% 80.0%
3781329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 41.0 3.50e-01 75.0% 40.0%
4189465 919.1.1.1 few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 0.61 44.0 4.65e-01 100.0% 100.0%
3475436 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 38.0 3.33e-01 72.7% 41.4%
3924082 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.59 37.0 3.18e-01 72.7% 36.0%
4986717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 3.82e-01 79.5% 95.4%
5066472 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.59 48.0 3.73e-01 100.0% 41.0%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.59 48.0 2.72e-01 90.9% 10.3%
4990102 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 35.0 3.53e-01 72.7% 60.0%
3399130 7524.1.1.4 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › DUF1487 0.58 50.0 3.18e-01 100.0% 29.6%
4655710 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.57 44.0 3.21e-01 90.9% 67.1%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.55 43.0 3.40e-01 90.9% 96.2%
3550232 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.55 44.0 3.66e-01 93.2% 72.9%
3889228 386.1.1.66 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.55 39.0 3.34e-01 79.5% 51.3%
5068097 2484.1.1.71 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.54 39.0 2.32e-01 81.8% 62.3%
3714090 4246.1.1.0 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.54 37.0 2.13e-01 72.7% 36.8%
3599539 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.53 47.0 3.17e-01 100.0% 82.4%
3231897 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 43.0 2.62e-01 100.0% 25.1%
3852016 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.52 39.0 3.06e-01 86.4% 51.8%
4147581 2003.1.1.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N 0.52 41.0 2.72e-01 90.9% 39.0%
3673291 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.21e-01 90.9% 84.4%