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MT362618.1__QJT70453.1__X__00092

Bact-Vir

MT362618.1__QJT70453.1__X__00092

Identity

Accession:
MT362618 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_MaeS

TaxID: 2736190

Cluster

View cluster (140 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-87
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 5.95e-01 100.0% 93.8%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 5.87e-01 100.0% 90.6%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 5.94e-01 100.0% 93.4%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 64.0 5.65e-01 91.3% 95.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 5.78e-01 100.0% 91.9%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 66.0 5.74e-01 100.0% 94.3%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 5.74e-01 100.0% 94.2%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 51.0 4.32e-01 91.3% 89.1%
3eo7A01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 41.0 2.96e-01 76.2% 88.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 46.0 3.39e-01 100.0% 48.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 44.0 3.20e-01 91.3% 45.0%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.28e-01 87.5% 85.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995743 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 72.0 6.18e-01 97.5% 90.8%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 70.0 6.01e-01 97.5% 90.8%
4460376 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 68.0 5.88e-01 97.5% 93.3%
4995742 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 67.0 5.98e-01 100.0% 96.4%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 65.0 5.62e-01 96.2% 93.3%
4952337 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 44.0 4.14e-01 82.5% 81.0%
4938286 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 45.0 3.94e-01 85.0% 63.5%
4643900 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.54 29.0 3.05e-01 88.7% 54.3%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 2.94e-01 70.0% 81.3%
3738846 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.53 36.0 2.64e-01 70.0% 71.0%
4337890 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 42.0 3.13e-01 88.7% 67.1%
1088604 11.1.1.311 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CueP 0.52 42.0 3.36e-01 87.5% 85.1%
3510752 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.51 27.0 2.99e-01 87.5% 62.1%
D2 high residues 91-227
PDB
Domain cluster: rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 68.0 7.32e-01 100.0% 95.0%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 67.0 5.82e-01 100.0% 57.5%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 67.0 7.16e-01 100.0% 95.0%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 67.0 7.15e-01 100.0% 95.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 68.0 5.82e-01 100.0% 58.3%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 62.0 6.58e-01 97.1% 87.7%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 65.0 7.00e-01 100.0% 95.8%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 60.0 4.83e-01 96.4% 43.8%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 60.0 6.44e-01 97.1% 90.0%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 59.0 6.46e-01 96.4% 93.8%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 60.0 5.53e-01 96.4% 63.4%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 62.0 4.97e-01 100.0% 46.1%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 62.0 6.44e-01 100.0% 89.1%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 59.0 6.23e-01 97.1% 87.8%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 59.0 5.40e-01 97.1% 62.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 59.0 6.17e-01 97.8% 87.1%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 64.0 6.71e-01 100.0% 94.4%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 59.0 4.91e-01 97.8% 49.8%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 63.0 6.53e-01 100.0% 92.3%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 59.0 4.73e-01 96.4% 45.9%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 56.0 5.96e-01 100.0% 89.1%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 63.0 4.96e-01 100.0% 47.1%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 61.0 6.24e-01 97.8% 90.1%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 55.0 4.33e-01 100.0% 44.6%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 62.0 5.62e-01 100.0% 96.0%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.63 33.0 3.88e-01 94.9% 72.8%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 25.0 3.20e-01 97.8% 69.7%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 27.0 3.09e-01 94.9% 69.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4379629 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.86 68.0 7.26e-01 100.0% 92.5%
3387590 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 65.0 7.09e-01 100.0% 93.0%
4876750 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 68.0 7.17e-01 100.0% 90.4%
5979 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 68.0 7.20e-01 100.0% 91.9%
3015239 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 66.0 7.09e-01 100.0% 92.4%
4500973 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 69.0 7.29e-01 100.0% 93.5%
426904 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 67.0 7.09e-01 100.0% 91.1%
2096126 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 67.0 7.07e-01 100.0% 92.6%
4542774 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 68.0 7.25e-01 100.0% 95.8%
4162061 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 68.0 7.21e-01 100.0% 94.3%
4650779 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 67.0 7.07e-01 100.0% 92.0%
4360456 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 68.0 7.06e-01 100.0% 90.0%
3291440 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 60.0 6.69e-01 100.0% 92.7%
4437554 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 67.0 7.02e-01 100.0% 92.8%
4336156 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 67.0 7.15e-01 100.0% 96.7%
2492036 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 66.0 6.81e-01 100.0% 89.1%
2878147 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 67.0 6.75e-01 100.0% 86.1%
4599875 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 61.0 6.53e-01 97.1% 89.2%
5039026 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 60.0 6.37e-01 97.1% 87.5%
4876748 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 61.0 6.46e-01 99.3% 89.5%
4102438 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 60.0 6.37e-01 97.1% 90.0%
5978 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 62.0 6.54e-01 100.0% 91.9%
4069893 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 61.0 6.44e-01 100.0% 90.4%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 62.0 6.52e-01 100.0% 91.9%
4633559 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 64.0 6.64e-01 100.0% 92.2%
4860663 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 60.0 5.96e-01 97.8% 78.6%
4083029 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 61.0 6.43e-01 100.0% 91.2%
3015240 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 60.0 6.38e-01 100.0% 91.8%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 59.0 6.31e-01 97.8% 91.7%
3963789 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 59.0 6.28e-01 97.1% 91.7%
136536 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 58.0 6.12e-01 97.1% 88.5%
3351103 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.43e-01 100.0% 88.1%
4146527 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 62.0 6.43e-01 100.0% 90.8%
1871497 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.75 57.0 6.14e-01 100.0% 92.4%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 63.0 6.01e-01 100.0% 78.6%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 63.0 6.54e-01 100.0% 94.6%
3397928 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 60.0 6.35e-01 96.4% 94.4%
3251867 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 61.0 6.32e-01 100.0% 93.1%
149160 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.72 66.0 6.55e-01 100.0% 92.2%
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.72 63.0 6.30e-01 99.3% 90.6%
3244229 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 61.0 6.35e-01 100.0% 96.8%
3719938 227.1.1.17 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.71 64.0 6.41e-01 100.0% 92.1%
4998584 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 60.0 6.13e-01 98.5% 90.4%
4943404 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 57.0 5.84e-01 97.8% 90.0%
3478161 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.69 60.0 6.04e-01 96.4% 91.9%
3256387 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.67 62.0 5.95e-01 98.5% 94.2%
3520418 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.66 61.0 5.92e-01 97.1% 90.0%
3406311 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.66 61.0 5.85e-01 97.8% 88.4%
3596476 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 60.0 5.98e-01 100.0% 96.5%
3210421 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.64 60.0 5.75e-01 98.5% 88.4%
3734891 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.64 60.0 5.83e-01 100.0% 95.3%
3722114 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.63 57.0 5.52e-01 97.8% 91.6%
4453444 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 27.0 3.40e-01 97.8% 72.0%
980877 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.52 30.0 2.79e-01 96.4% 42.3%