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MT366568.1__QJT70689.1__X__00061

Bact-Vir

MT366568.1__QJT70689.1__X__00061

Identity

Accession:
MT366568 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_R4

TaxID: 2736196

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 125-240
PDB
Domain cluster: rep: MK348510.1__QAY02728.1__PFS2_064__00064__D13-127
D2 medium residues 1-71
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 102.7 2.80e-29 100.0% 31.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 56.0 4.06e-01 98.6% 34.7%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 49.0 4.04e-01 100.0% 44.6%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 55.0 3.64e-01 100.0% 26.0%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 52.0 3.35e-01 100.0% 23.9%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 4.10e-01 95.8% 58.1%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.56 33.0 2.64e-01 71.8% 27.7%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.16e-01 100.0% 26.3%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 45.0 2.95e-01 100.0% 74.3%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 36.0 3.40e-01 70.4% 78.9%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 30.0 3.00e-01 76.1% 49.4%
1qwkA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 46.0 3.07e-01 100.0% 41.3%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 3.54e-01 71.8% 90.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.79e-01 100.0% 35.1%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 42.0 2.74e-01 100.0% 30.5%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 2.82e-01 100.0% 44.4%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 2.97e-01 78.9% 55.2%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 43.0 2.95e-01 100.0% 87.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033843 2004.1.1.313 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.83 76.0 5.43e-01 100.0% 36.4%
3958923 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 55.0 4.04e-01 100.0% 35.0%
None — 0.63 56.0 4.26e-01 97.2% 45.6%
None — 0.63 57.0 4.19e-01 100.0% 41.7%
None — 0.63 56.0 4.17e-01 100.0% 42.9%
3517388 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 55.0 4.05e-01 100.0% 41.5%
4134156 2004.1.1.125 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N 0.62 55.0 4.21e-01 98.6% 45.6%
None — 0.62 55.0 4.00e-01 98.6% 38.9%
4998586 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 54.0 3.89e-01 100.0% 33.3%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.62 55.0 3.67e-01 100.0% 27.7%
None — 0.62 54.0 4.08e-01 97.2% 42.9%
5036693 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.62 53.0 3.97e-01 97.2% 38.4%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.62 55.0 3.69e-01 100.0% 30.4%
None — 0.62 55.0 4.16e-01 100.0% 44.1%
4013468 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 54.0 3.66e-01 100.0% 29.8%
None — 0.62 54.0 4.19e-01 98.6% 46.3%
5003899 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.62 55.0 3.65e-01 100.0% 29.3%
None — 0.62 54.0 4.05e-01 97.2% 42.9%
3197159 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 54.0 3.34e-01 100.0% 19.3%
3594982 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.61 54.0 3.68e-01 100.0% 29.6%
4971994 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 54.0 3.71e-01 100.0% 28.4%
3703312 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 54.0 3.36e-01 100.0% 19.7%
3653298 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.61 53.0 3.92e-01 100.0% 38.4%
4314819 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.59 51.0 3.80e-01 100.0% 36.9%
3575760 2004.1.1.183 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 0.59 51.0 3.90e-01 100.0% 42.9%
4470389 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 45.0 3.52e-01 100.0% 38.2%
3506749 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.53 39.0 3.04e-01 80.3% 75.2%
3209465 109.4.1.2280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UME, HEAT_MEC1_N 0.53 45.0 2.50e-01 98.6% 14.7%
4890998 148.1.3.28 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.52 42.0 2.82e-01 100.0% 21.8%
4778018 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.52 35.0 3.40e-01 71.8% 87.8%
3632622 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 40.0 3.51e-01 88.7% 56.4%
4859430 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 44.0 3.36e-01 100.0% 47.5%
5025359 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.51 42.0 2.96e-01 100.0% 49.8%
4020812 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 2.69e-01 93.0% 28.9%
3893333 2004.1.1.495 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.50 43.0 3.22e-01 100.0% 46.2%
3289119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 2.76e-01 100.0% 79.7%
D3 medium residues 72-123
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 31.5 1.70e-07 98.1% 19.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3849476 109.4.1.1595 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TANGO6_N 0.55 45.0 2.76e-01 88.5% 50.6%