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MT366760.1__QJT70800.1__GR7B_00002__00002

Bact-Vir

MT366760.1__QJT70800.1__GR7B_00002__00002

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

64.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-107
PDB
Domain cluster: rep: HQ317390.1__AFK66706.1__COPG_00110__00110__D4-103
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 41.0 5.01e-01 82.7% 98.4%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 39.0 4.89e-01 74.0% 98.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 49.0 5.46e-01 76.0% 98.8%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 41.0 4.88e-01 79.8% 94.4%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 38.0 4.35e-01 76.9% 81.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 38.0 3.70e-01 77.9% 53.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.53e-01 88.5% 86.4%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 40.0 4.29e-01 79.8% 77.2%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.54e-01 73.1% 89.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.36e-01 78.8% 94.6%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.15e-01 74.0% 76.9%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 36.0 3.44e-01 82.7% 52.9%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.28e-01 72.1% 89.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.42e-01 100.0% 90.6%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.74e-01 83.7% 69.2%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.76e-01 100.0% 85.2%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 39.0 3.88e-01 79.8% 100.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006089 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 5.18e-01 76.0% 98.3%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 46.0 5.40e-01 76.0% 98.6%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 4.95e-01 78.8% 100.0%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.30e-01 76.0% 96.5%
3866907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 48.0 5.27e-01 76.0% 96.5%
3317929 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 44.0 4.51e-01 94.2% 71.0%
4091379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.87e-01 93.3% 95.7%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.80e-01 93.3% 100.0%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.84e-01 82.7% 87.1%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 42.0 4.85e-01 92.3% 98.6%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 45.0 4.75e-01 81.7% 83.5%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.86e-01 78.8% 100.0%
3517415 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 39.0 4.60e-01 82.7% 98.5%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.85e-01 77.9% 88.9%
3868602 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.57e-01 74.0% 82.0%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.76e-01 78.8% 88.2%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 39.0 4.08e-01 94.2% 69.5%
3794445 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 41.0 4.58e-01 87.5% 88.7%
3794500 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 39.0 3.21e-01 85.6% 35.7%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 42.0 4.36e-01 100.0% 77.9%
3893892 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 42.0 4.73e-01 72.1% 100.0%
3842362 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.59 45.0 4.67e-01 81.7% 95.8%
509 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 40.0 4.38e-01 70.2% 90.4%
3519380 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 40.0 4.45e-01 78.8% 92.5%
3243710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.49e-01 73.1% 100.0%
3258480 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.58 39.0 2.82e-01 84.6% 24.3%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.20e-01 89.4% 89.3%
3328224 4.1.1.336 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7699 0.57 43.0 3.99e-01 78.8% 68.5%
3505589 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.57 37.0 3.58e-01 76.9% 57.5%
3677829 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 42.0 4.14e-01 98.1% 73.6%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 46.0 4.75e-01 99.0% 96.8%
3715569 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.34e-01 77.9% 43.6%
3243776 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.54 40.0 3.95e-01 76.9% 90.0%
3226744 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.61e-01 86.5% 98.9%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 3.89e-01 81.7% 98.4%
3226474 2.1.1.253 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.53 37.0 4.24e-01 98.1% 100.0%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 41.0 3.94e-01 85.6% 76.0%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.99e-01 92.3% 95.0%
3476768 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.26e-01 76.9% 76.5%
3730739 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 38.0 3.58e-01 78.8% 76.7%
3703044 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.51 36.0 3.10e-01 72.1% 97.6%
3390498 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 40.0 3.00e-01 84.6% 43.1%
3371134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 43.0 4.18e-01 98.1% 96.7%
D2 medium residues 120-192
PDB