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MT366760.1__QJT70804.1__GR7B_00006__00006

Bact-Vir

MT366760.1__QJT70804.1__GR7B_00006__00006

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

63.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-73
PDB
Domain cluster: rep: NC_048702.1__YP_009837725.1__HWB57_gp126__00126__D42-105
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ux6A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 36.0 3.10e-01 75.4% 81.1%
4qzvB02 2.20.210.30 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.51 41.0 4.13e-01 100.0% 91.2%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.42e-01 97.1% 69.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076160 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.58 50.0 4.26e-01 100.0% 57.9%
4028919 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.57 48.0 3.33e-01 100.0% 33.2%
3217608 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.56 50.0 4.46e-01 100.0% 96.0%
3616027 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.53 47.0 4.00e-01 100.0% 78.3%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 44.0 4.19e-01 98.6% 77.6%
3936054 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.51 43.0 3.82e-01 100.0% 81.8%
3168268 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.50 43.0 3.10e-01 100.0% 84.9%
D2 high residues 187-210_222-290
PDB
D3 medium residues 87-178
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 54.0 5.21e-01 97.8% 79.2%
2pl2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 42.0 3.28e-01 71.7% 48.5%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 41.0 3.50e-01 71.7% 56.4%
1is9A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 46.0 3.17e-01 87.0% 86.6%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 3.09e-01 100.0% 76.9%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 3.66e-01 82.6% 52.5%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 40.0 3.42e-01 73.9% 56.8%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 45.0 4.22e-01 88.0% 74.6%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.56 41.0 4.07e-01 80.4% 97.1%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 38.0 3.09e-01 73.9% 85.4%
2ms7A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 36.0 3.53e-01 93.5% 61.8%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 38.0 4.03e-01 73.9% 85.5%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 3.03e-01 73.9% 58.3%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.53 42.0 4.07e-01 91.3% 80.9%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 4.06e-01 90.2% 79.5%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 41.0 3.50e-01 85.9% 86.0%
1ileA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.50 44.0 3.52e-01 98.9% 91.1%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.50 36.0 3.32e-01 77.2% 82.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928908 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.71 46.0 3.85e-01 84.8% 39.4%
4015517 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.66 49.0 3.70e-01 77.2% 94.0%
3804192 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.65 46.0 3.69e-01 72.8% 50.0%
3814043 101.1.10.21 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.64 50.0 3.63e-01 84.8% 88.3%
3224101 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.64 41.0 3.46e-01 76.1% 39.4%
3275781 109.4.1.1136 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N 0.63 45.0 3.11e-01 76.1% 78.8%
4977457 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.62 45.0 4.26e-01 77.2% 84.5%
3287294 109.4.1.2330 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31120 0.62 42.0 4.23e-01 71.7% 68.4%
4928042 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.61 35.0 3.61e-01 71.7% 58.9%
3218391 226.1.1.2 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.60 40.0 4.22e-01 82.6% 74.1%
3626888 109.4.1.952 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_P4H 0.60 46.0 4.02e-01 79.3% 57.0%
4011983 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 46.0 4.09e-01 82.6% 57.7%
3664499 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 42.0 3.96e-01 75.0% 89.1%
3628171 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.57 46.0 3.54e-01 85.9% 50.5%
3262951 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 42.0 3.48e-01 78.3% 54.5%
4680489 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 46.0 4.23e-01 94.6% 93.6%
3717987 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 44.0 3.24e-01 87.0% 94.6%
3374157 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 37.0 2.38e-01 73.9% 36.1%
None — 0.51 42.0 3.36e-01 89.1% 45.9%
4510734 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.50 41.0 3.33e-01 89.1% 48.9%