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MT366760.1__QJT70848.1__GR7B_00050__00050

Bact-Vir

MT366760.1__QJT70848.1__GR7B_00050__00050

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-76
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 57.0 4.46e-01 94.7% 94.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.00e-01 100.0% 81.6%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 45.0 3.87e-01 72.4% 86.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 44.0 3.76e-01 85.5% 42.5%
1auvA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 37.0 4.10e-01 82.9% 73.3%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 40.0 3.81e-01 85.5% 53.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.74e-01 89.5% 84.3%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 44.0 3.62e-01 85.5% 40.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.31e-01 84.2% 72.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 47.0 4.24e-01 85.5% 58.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.30e-01 84.2% 73.2%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.94e-01 88.2% 52.7%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 42.0 3.56e-01 72.4% 79.8%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.61 41.0 3.76e-01 84.2% 51.5%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 3.59e-01 85.5% 42.2%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 40.0 4.07e-01 84.2% 69.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 42.0 4.43e-01 89.5% 82.1%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 46.0 4.06e-01 80.3% 95.3%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.61e-01 100.0% 37.2%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 41.0 3.28e-01 85.5% 34.6%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 44.0 3.41e-01 90.8% 33.3%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 47.0 4.07e-01 85.5% 62.2%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.59 47.0 4.28e-01 89.5% 93.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.46e-01 96.1% 37.3%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.62e-01 88.2% 45.5%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.46e-01 96.1% 39.1%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.43e-01 96.1% 37.9%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 46.0 4.27e-01 88.2% 68.4%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.58 49.0 3.52e-01 100.0% 63.5%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 47.0 3.77e-01 88.2% 52.1%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.43e-01 90.8% 38.4%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 37.0 3.74e-01 82.9% 66.7%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.40e-01 90.8% 39.1%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 40.0 3.29e-01 88.2% 38.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.54e-01 89.5% 47.2%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 41.0 3.61e-01 80.3% 66.7%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.55 41.0 3.11e-01 84.2% 62.9%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.11e-01 100.0% 46.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.06e-01 86.8% 81.3%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.80e-01 97.4% 95.0%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.54 47.0 4.33e-01 97.4% 83.7%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 43.0 3.63e-01 92.1% 67.4%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.09e-01 80.3% 40.1%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 44.0 3.50e-01 94.7% 93.3%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.41e-01 100.0% 44.2%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.68e-01 98.7% 94.3%
1r6zA03 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.52 42.0 3.57e-01 89.5% 67.5%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 41.0 3.11e-01 93.4% 95.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.83e-01 88.2% 78.5%
3927663 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.70e-01 93.4% 76.9%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.00e-01 84.2% 88.3%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.05e-01 89.5% 51.0%
3500448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.78e-01 84.2% 80.0%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 45.0 3.65e-01 89.5% 36.6%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.69e-01 84.2% 80.0%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.85e-01 88.2% 88.3%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.88e-01 88.2% 90.0%
3583485 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 45.0 4.10e-01 88.2% 54.3%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.64 42.0 4.57e-01 84.2% 81.2%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.62 45.0 4.30e-01 89.5% 64.4%
3646521 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.62 53.0 5.33e-01 96.1% 96.0%
4233298 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 47.0 3.69e-01 100.0% 37.1%
64 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 44.0 3.63e-01 85.5% 40.4%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.62 41.0 3.78e-01 84.2% 52.0%
3417330 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 41.0 2.99e-01 84.2% 23.7%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.57e-01 84.2% 84.6%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.62 48.0 4.51e-01 90.8% 68.4%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 42.0 4.31e-01 88.2% 74.0%
4512371 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.61 46.0 3.67e-01 100.0% 38.7%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.61 45.0 4.34e-01 89.5% 69.4%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 45.0 4.34e-01 84.2% 67.8%
3278636 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 44.0 3.53e-01 85.5% 38.1%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.60 42.0 4.17e-01 89.5% 68.8%
3310577 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 47.0 4.31e-01 84.2% 73.0%
3445055 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 47.0 4.22e-01 84.2% 74.3%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 44.0 4.04e-01 89.5% 59.0%
4999024 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.60 42.0 3.17e-01 85.5% 29.0%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 42.0 4.32e-01 88.2% 76.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 44.0 4.19e-01 89.5% 66.7%
3280742 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 44.0 3.46e-01 89.5% 36.5%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.59 43.0 3.84e-01 89.5% 54.6%
3026889 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 44.0 3.40e-01 96.1% 34.8%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 43.0 3.85e-01 89.5% 55.6%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 46.0 4.35e-01 93.4% 71.6%
4994895 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 45.0 4.46e-01 89.5% 81.2%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 38.0 4.18e-01 88.2% 88.3%
3785886 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.57 45.0 3.29e-01 85.5% 75.1%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 2.62e-01 88.2% 8.1%
4969566 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.56 41.0 4.05e-01 89.5% 73.8%
3953729 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 43.0 3.79e-01 90.8% 54.2%
5050716 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 44.0 3.65e-01 89.5% 48.9%
2855767 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.55 45.0 3.75e-01 88.2% 53.5%
4505054 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 41.0 3.23e-01 90.8% 37.0%
3283078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 41.0 3.38e-01 85.5% 41.6%
4318524 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 41.0 3.26e-01 90.8% 37.6%
5029433 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 44.0 3.50e-01 89.5% 43.1%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 43.0 4.15e-01 89.5% 77.6%
5073888 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.54 38.0 3.84e-01 89.5% 73.8%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 42.0 4.18e-01 88.2% 87.5%
72 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 41.0 3.37e-01 100.0% 43.4%
3618922 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.51 42.0 3.93e-01 93.4% 73.7%
140426 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.51 41.0 3.14e-01 93.4% 96.1%
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.51 42.0 3.59e-01 94.7% 80.8%
4052154 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.51 37.0 2.98e-01 78.9% 97.1%