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MT366760.1__QJT70873.1__GR7B_00075__00075

Bact-Vir

MT366760.1__QJT70873.1__GR7B_00075__00075

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-304
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13353.12 best Fer4_12 24.4 4.30e-05 46.2% 58.4%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.83 57.0 6.86e-01 100.0% 98.6%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.67 50.0 5.53e-01 99.7% 94.2%
5vxsA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.66 49.0 5.19e-01 99.0% 84.0%
5yrpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.66 46.0 5.23e-01 99.0% 93.8%
2r6oA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.65 51.0 5.44e-01 100.0% 93.4%
2chrA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 42.0 4.93e-01 99.0% 94.1%
4r9xA00 3.20.20.380 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain 0.64 44.0 4.97e-01 98.3% 91.5%
4bfaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 46.0 5.00e-01 99.0% 91.8%
4g9pA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.62 48.0 4.96e-01 99.0% 83.6%
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 32.0 4.12e-01 98.0% 84.6%
3mu7A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 49.0 5.12e-01 99.0% 92.3%
4k36B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 56.0 5.20e-01 97.7% 89.6%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 36.0 4.24e-01 99.0% 85.4%
1lt7B00 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.58 45.0 4.45e-01 98.7% 74.9%
4gieA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.58 42.0 4.31e-01 99.3% 76.0%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 50.0 5.01e-01 97.0% 90.4%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.57 45.0 4.62e-01 95.0% 84.5%
1vcvA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 40.0 4.58e-01 98.7% 94.2%
2xtkA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 51.0 5.09e-01 99.0% 91.6%
1telA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.57 41.0 4.27e-01 95.0% 77.7%
2o14A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 34.0 4.03e-01 99.0% 85.0%
1rliD00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 32.0 4.04e-01 96.3% 94.0%
2bgwB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 26.0 3.74e-01 92.3% 94.7%
2wmiA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 51.0 4.74e-01 95.7% 79.6%
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 43.0 4.37e-01 95.7% 82.8%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 26.0 3.46e-01 94.0% 82.7%
1b0zA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 31.0 3.83e-01 97.3% 89.1%
1xv5A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 34.0 4.14e-01 96.0% 97.9%
3rdkB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 49.0 4.73e-01 98.3% 87.1%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 4.18e-01 95.7% 79.2%
3dz1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 4.24e-01 95.7% 81.7%
3u7qB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 26.0 3.52e-01 93.3% 91.1%
3qxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 46.0 4.65e-01 93.3% 98.0%
6oibA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 26.0 3.57e-01 98.3% 92.1%
1j93A00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 46.0 4.40e-01 94.3% 85.7%
3e48A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 32.0 3.98e-01 95.0% 99.5%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 21.0 3.29e-01 93.6% 93.3%
2xtmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 32.0 3.72e-01 92.6% 87.0%
1xfdA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 4.27e-01 99.0% 93.1%
4da9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 35.0 4.02e-01 82.3% 95.4%
4zi5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 36.0 4.02e-01 98.7% 91.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991319 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.92 65.0 7.76e-01 100.0% 99.1%
None — 0.92 63.0 7.64e-01 99.7% 99.5%
4549416 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.91 60.0 7.37e-01 100.0% 98.0%
3838534 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.91 73.0 8.06e-01 100.0% 99.2%
4279469 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 58.0 7.03e-01 100.0% 92.8%
5010295 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 62.0 7.45e-01 100.0% 99.0%
4936106 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 62.0 7.29e-01 100.0% 95.4%
4932050 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 56.0 6.88e-01 100.0% 93.6%
4303997 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.88 64.0 7.30e-01 100.0% 94.8%
4599886 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.88 62.0 7.23e-01 100.0% 96.4%
4313457 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.88 63.0 7.44e-01 100.0% 99.5%
4970204 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.87 64.0 7.36e-01 100.0% 97.0%
4156735 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.87 60.0 7.00e-01 100.0% 94.1%
4279772 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.87 66.0 7.53e-01 99.7% 98.3%
4277885 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.87 59.0 6.94e-01 100.0% 93.6%
3965152 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.87 57.0 7.05e-01 100.0% 99.0%
4554434 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.85 61.0 7.08e-01 100.0% 97.3%
4929229 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.84 64.0 7.33e-01 98.7% 100.0%
4612866 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.83 58.0 6.89e-01 100.0% 98.6%
4337349 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.82 59.0 6.89e-01 100.0% 98.2%
3977266 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.82 59.0 6.88e-01 99.7% 99.1%
4458545 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.82 58.0 6.83e-01 100.0% 98.2%
2440205 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.81 57.0 6.61e-01 99.3% 94.2%
5023330 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.80 62.0 7.00e-01 100.0% 98.3%
4521555 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.80 64.0 7.11e-01 100.0% 99.2%
4995167 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.80 63.0 7.02e-01 99.3% 99.6%
4984856 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.79 64.0 7.03e-01 100.0% 99.2%
5067065 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.79 63.0 6.99e-01 99.0% 99.2%
3602602 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.79 62.0 6.92e-01 99.7% 99.2%
2130719 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.67 50.0 5.29e-01 99.0% 86.6%
4943846 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 51.0 5.33e-01 97.0% 86.1%
5065427 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 52.0 5.01e-01 97.7% 74.2%
5079264 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 51.0 5.17e-01 96.7% 81.7%
868894 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.64 49.0 5.21e-01 100.0% 88.6%
3215997 2002.1.1.290 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 0.63 40.0 4.51e-01 81.9% 81.3%
3337255 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 49.0 5.02e-01 98.3% 88.4%
3593046 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 27.0 3.76e-01 96.0% 82.7%
3671416 2002.1.1.11 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PK 0.59 44.0 4.54e-01 98.7% 80.0%
3277808 2002.1.1.119 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CutC 0.59 43.0 4.79e-01 98.7% 94.9%
3263185 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.58 31.0 4.08e-01 98.3% 90.6%
4346960 2002.1.1.66 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.57 43.0 4.68e-01 100.0% 90.6%
4092361 2002.1.1.90 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.57 45.0 4.67e-01 96.0% 85.5%
3931589 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 42.0 4.73e-01 94.3% 96.5%
5066421 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.57 26.0 3.46e-01 96.3% 77.5%
4017401 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.57 50.0 4.94e-01 99.0% 88.3%
3574206 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.56 35.0 3.99e-01 97.3% 79.6%
3199898 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 34.0 3.96e-01 98.7% 82.4%
4944764 2007.3.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.56 27.0 3.50e-01 94.6% 78.0%
3320953 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 44.0 4.73e-01 99.0% 95.0%
4972403 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 35.0 4.11e-01 97.7% 88.1%
3410655 2004.1.1.222 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RhoGAP_pG1_pG2 0.55 28.0 3.71e-01 92.6% 87.5%
3903964 2007.9.1.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › NPHP3 0.55 30.0 3.77e-01 91.6% 85.7%
3762563 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.52 28.0 3.70e-01 75.3% 92.7%
3937210 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 40.0 4.40e-01 95.3% 98.3%
3254720 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.52 34.0 3.97e-01 92.3% 90.2%
3593716 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 34.0 3.94e-01 93.6% 89.1%
4273821 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 32.0 3.85e-01 94.3% 92.3%
None — 0.51 34.0 3.98e-01 95.7% 94.6%
5012821 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.50 30.0 3.81e-01 91.6% 95.1%
4003793 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.50 35.0 3.71e-01 95.0% 78.5%
4029780 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.50 36.0 4.04e-01 98.0% 93.4%