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MT366760.1__QJT70918.1__GR7B_00120__00120

Bact-Vir

MT366760.1__QJT70918.1__GR7B_00120__00120

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

66.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 185-281
PDB
Domain cluster: rep: LC680885.1__BDE75744.1__X__00206__D318-424
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.88 59.0 6.79e-01 71.1% 91.8%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 26.0 3.76e-01 94.8% 94.6%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.43e-01 72.2% 86.7%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 27.0 3.55e-01 93.8% 95.7%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 36.0 3.40e-01 72.2% 77.3%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 35.0 2.99e-01 73.2% 66.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419725 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.90 67.0 7.20e-01 80.4% 88.2%
3945427 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.86 65.0 6.98e-01 78.4% 89.4%
4091312 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.86 67.0 7.13e-01 80.4% 91.8%
4058606 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.85 66.0 6.82e-01 80.4% 90.0%
4330501 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.85 75.0 6.96e-01 94.8% 89.2%
4046343 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.84 65.0 6.72e-01 80.4% 90.0%
4285674 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.83 64.0 6.62e-01 80.4% 88.9%
4062730 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.83 61.0 6.64e-01 77.3% 92.5%
4404580 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.82 61.0 6.62e-01 78.4% 93.8%
4447486 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.81 60.0 6.60e-01 77.3% 93.8%
4048745 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.81 62.0 6.45e-01 80.4% 92.2%
4248149 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.81 61.0 6.46e-01 78.4% 89.4%
3255870 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.75 65.0 6.33e-01 91.8% 92.4%
3993013 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.55 32.0 2.22e-01 95.9% 16.7%
5055819 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.50 29.0 3.59e-01 90.7% 94.8%
D2 medium residues 16-98
PDB
D3 medium residues 287-437
PDB
Domain cluster: rep: NAD-dependent_DNA_ligase__YP_010084817__Shrimp_hemocyte_iridescent_virus__2039780__D372-518
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4is7A01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.83 38.0 5.70e-01 99.3% 98.5%
3kkaD00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.79 35.0 5.15e-01 96.7% 94.1%
3bs7A00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.77 36.0 5.01e-01 96.7% 89.3%
1u9lB00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.74 36.0 5.07e-01 71.5% 100.0%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 43.0 3.65e-01 89.4% 90.7%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 26.0 2.97e-01 74.2% 65.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4248263 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.83 76.0 7.01e-01 100.0% 77.4%
4318949 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.83 76.0 7.14e-01 100.0% 81.7%
4150545 102.1.1.104 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.83 76.0 7.20e-01 100.0% 84.0%
4370137 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.82 76.0 7.09e-01 100.0% 81.7%
4509914 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.82 76.0 7.09e-01 100.0% 81.7%
4668260 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.82 76.0 7.09e-01 100.0% 81.7%
4574629 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 74.0 7.20e-01 100.0% 87.3%
4468191 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.82 75.0 7.02e-01 100.0% 81.1%
4085490 102.1.1.104 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.82 75.0 7.05e-01 100.0% 81.7%
4035758 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.82 75.0 6.89e-01 100.0% 77.4%
4066899 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.82 75.0 7.04e-01 100.0% 81.7%
4512339 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.81 75.0 7.01e-01 100.0% 81.7%
4091625 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.81 75.0 7.04e-01 100.0% 82.2%
4414670 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.81 75.0 5.93e-01 100.0% 51.6%
4258230 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.81 75.0 5.92e-01 100.0% 51.6%
4659414 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.81 74.0 6.98e-01 100.0% 81.7%
4527845 102.1.1.104 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.81 74.0 7.05e-01 100.0% 84.0%
4051001 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.81 74.0 6.97e-01 100.0% 81.7%
4098561 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.81 74.0 6.81e-01 100.0% 77.4%
4333858 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.81 74.0 6.94e-01 100.0% 81.7%
4432595 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.81 74.0 6.93e-01 100.0% 81.7%
4668711 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.81 75.0 6.87e-01 100.0% 78.4%
4404544 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.80 73.0 6.69e-01 100.0% 75.4%
4289465 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.80 75.0 6.77e-01 100.0% 76.4%
4076819 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.80 75.0 6.92e-01 100.0% 82.6%
4058875 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.80 74.0 6.89e-01 100.0% 80.5%
4353086 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.80 73.0 6.87e-01 100.0% 81.7%
4358944 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.80 73.0 6.87e-01 100.0% 81.7%
4321047 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.80 71.0 6.80e-01 100.0% 82.8%
4380946 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.80 75.0 6.43e-01 100.0% 85.2%
4148402 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.80 41.0 5.62e-01 72.8% 95.0%
4199126 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.80 74.0 6.93e-01 100.0% 82.8%
4128729 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.80 73.0 6.82e-01 100.0% 81.7%
3971169 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.79 42.0 4.70e-01 91.4% 65.0%
4332374 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.79 72.0 6.76e-01 100.0% 81.7%
None — 0.79 74.0 7.00e-01 100.0% 93.1%
4058845 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.79 74.0 6.58e-01 100.0% 82.9%
3958117 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.78 73.0 6.74e-01 100.0% 80.5%
4181908 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.78 42.0 5.71e-01 98.0% 100.0%
4179566 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.78 73.0 6.75e-01 100.0% 94.1%
4161847 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.78 72.0 6.22e-01 100.0% 84.8%
4320384 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.77 71.0 6.55e-01 100.0% 79.5%
3278735 102.1.1.54 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD 0.77 44.0 5.04e-01 100.0% 74.8%
4974407 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 39.0 5.13e-01 70.2% 86.4%
4141107 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 39.0 5.19e-01 84.1% 95.0%
3261880 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.75 38.0 5.37e-01 71.5% 100.0%