←Back to structures

MT366760.1__QJT70936.1__GR7B_00138__00138

Bact-Vir

MT366760.1__QJT70936.1__GR7B_00138__00138

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-150
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00132__D47-143
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 2.79e-01 72.4% 59.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 38.0 2.87e-01 72.4% 50.9%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 36.0 3.15e-01 92.4% 45.9%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 3.04e-01 83.8% 53.9%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 3.07e-01 100.0% 45.3%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.50 29.0 3.41e-01 82.9% 84.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051542 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.49e-01 73.3% 73.7%
5045430 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.54 41.0 2.62e-01 83.8% 95.3%
5032312 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.52 28.0 2.79e-01 80.0% 46.4%
3306102 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.50 35.0 2.53e-01 71.4% 33.9%
D2 medium residues 159-235
PDB
Domain cluster: rep: MW073017.1__QPB08517.1__X__00038__D138-209
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 50.0 3.90e-01 100.0% 72.2%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.57 40.0 3.64e-01 74.0% 96.3%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.56 48.0 4.40e-01 100.0% 84.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1288872 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.53 45.0 3.56e-01 100.0% 95.5%
3246297 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 31.0 2.89e-01 79.2% 47.4%
D3 medium residues 240-287
PDB
Domain cluster: representative
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4248616 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 47.0 2.82e-01 100.0% 30.3%
5067631 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.56 39.0 3.02e-01 72.9% 33.6%
3784090 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.79e-01 100.0% 30.7%
4959201 815.1.1.1 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.54 40.0 3.33e-01 83.3% 50.5%
None — 0.54 47.0 2.75e-01 100.0% 37.0%
None — 0.54 47.0 2.75e-01 100.0% 36.6%
3607940 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 37.0 2.31e-01 87.5% 10.4%
3298646 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.42e-01 100.0% 12.9%
3738172 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.51 44.0 2.55e-01 100.0% 46.7%
4012442 7102.1.1.0 ↗ a+b three layers › C-terminal segment in 5'->3' exoribonucleases › C-terminal segment in 5'->3' exoribonucleases › C-terminal segment in 5'->3' exoribonucleases 0.50 35.0 3.47e-01 75.0% 82.0%