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MT366760.1__QJT70983.1__GR7B_00185__00185

Bact-Vir

MT366760.1__QJT70983.1__GR7B_00185__00185

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

51.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-83_166-190
PDB
D2 high residues 97-159
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 47.0 4.96e-01 100.0% 83.9%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 47.0 4.05e-01 100.0% 46.2%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 44.0 3.95e-01 95.2% 52.9%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 53.0 3.51e-01 100.0% 68.9%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.62 45.0 2.88e-01 77.8% 62.5%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 41.0 3.58e-01 87.3% 44.0%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 37.0 3.88e-01 85.7% 66.7%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 3.67e-01 88.9% 45.7%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 35.0 3.66e-01 87.3% 66.7%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.57 44.0 3.47e-01 88.9% 39.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 37.0 3.29e-01 87.3% 42.0%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 44.0 3.23e-01 88.9% 39.5%
1u0kA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 47.0 3.66e-01 100.0% 44.4%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.56e-01 90.5% 87.2%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.51e-01 88.9% 50.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.54 45.0 3.27e-01 92.1% 72.4%
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.03e-01 100.0% 64.5%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.58e-01 88.9% 50.0%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 2.67e-01 90.5% 34.5%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.49e-01 87.3% 57.0%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.53 40.0 3.38e-01 84.1% 55.1%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.65e-01 90.5% 55.5%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.61e-01 90.5% 56.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.64e-01 90.5% 34.5%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 41.0 2.79e-01 87.3% 83.6%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.49e-01 88.9% 53.6%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.54e-01 88.9% 55.1%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 45.0 3.07e-01 100.0% 56.4%
3ct8A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 3.02e-01 77.8% 39.8%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.52 39.0 2.98e-01 84.1% 39.8%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 38.0 2.83e-01 79.4% 96.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.68e-01 100.0% 22.8%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 43.0 3.01e-01 100.0% 63.3%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.20e-01 88.9% 76.1%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 2.95e-01 87.3% 91.4%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.66e-01 98.4% 62.0%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.39e-01 96.8% 46.9%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 37.0 2.86e-01 92.1% 32.2%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.51 33.0 3.31e-01 81.0% 65.1%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 4.10e-01 100.0% 85.7%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.88e-01 100.0% 38.4%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 42.0 3.40e-01 100.0% 58.3%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.75e-01 100.0% 49.7%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 35.0 2.48e-01 100.0% 19.7%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 41.0 3.01e-01 100.0% 31.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045741 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 52.0 5.23e-01 88.9% 73.8%
3212241 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 46.0 3.76e-01 100.0% 38.3%
5046747 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.63 50.0 3.11e-01 87.3% 17.8%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 3.50e-01 88.9% 34.5%
4960103 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 50.0 3.83e-01 92.1% 40.0%
3287567 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.61 43.0 3.81e-01 88.9% 52.2%
3255683 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.60 47.0 3.78e-01 88.9% 56.3%
3723734 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.60 48.0 3.74e-01 95.2% 38.7%
5018462 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 45.0 3.07e-01 85.7% 22.7%
3939857 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.47e-01 87.3% 56.8%
3691025 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 46.0 3.46e-01 88.9% 50.3%
3894488 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.57 41.0 3.62e-01 84.1% 49.0%
5019127 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 45.0 2.79e-01 88.9% 16.5%
4959633 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 46.0 3.09e-01 90.5% 24.3%
5052683 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 44.0 3.70e-01 88.9% 53.3%
165648 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.57 45.0 3.84e-01 95.2% 53.4%
5045368 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 46.0 3.59e-01 90.5% 40.7%
3250697 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 43.0 3.64e-01 88.9% 52.5%
5034348 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.56 47.0 2.75e-01 100.0% 45.1%
4945191 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 3.59e-01 88.9% 48.8%
5008034 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 43.0 3.52e-01 87.3% 49.6%
3251654 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.55 39.0 2.41e-01 74.6% 71.1%
5053530 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 44.0 3.58e-01 88.9% 48.8%
4014690 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.55 45.0 3.05e-01 95.2% 75.8%
3968145 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 43.0 3.54e-01 87.3% 53.3%
4944871 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 42.0 3.51e-01 87.3% 49.2%
4983714 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 42.0 3.58e-01 95.2% 50.5%
5005613 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 43.0 3.44e-01 88.9% 43.0%
4951489 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 42.0 3.58e-01 88.9% 53.0%
4958961 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 43.0 3.46e-01 90.5% 45.2%
5062837 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 42.0 3.46e-01 88.9% 47.2%
4950593 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 41.0 3.37e-01 88.9% 44.4%
3664523 304.55.1.15 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.54 40.0 3.40e-01 81.0% 100.0%
5045304 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.62e-01 95.2% 50.4%
5033694 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 41.0 3.44e-01 88.9% 56.0%
5060170 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 44.0 2.94e-01 100.0% 29.2%
5049662 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 41.0 3.50e-01 88.9% 52.2%
4931489 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 42.0 3.42e-01 88.9% 48.0%
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 40.0 2.86e-01 92.1% 26.8%
3523834 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 42.0 2.67e-01 95.2% 15.3%
3998938 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.53 42.0 2.55e-01 92.1% 18.8%
5048846 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 41.0 3.43e-01 88.9% 50.0%
3567641 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.53 44.0 4.01e-01 100.0% 77.8%
3605264 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.52 42.0 2.78e-01 96.8% 43.5%
4984611 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 42.0 2.96e-01 88.9% 28.2%
4949125 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 40.0 3.17e-01 88.9% 39.3%
3364928 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.52 42.0 2.71e-01 95.2% 37.9%
3930150 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.52 41.0 2.80e-01 95.2% 40.3%
4975334 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 40.0 3.20e-01 88.9% 42.1%
4022991 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 45.0 2.85e-01 100.0% 52.9%
4958963 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.33e-01 88.9% 48.0%
5005720 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 40.0 3.34e-01 88.9% 47.2%
4970452 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.49e-01 88.9% 56.2%
4999616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 2.66e-01 100.0% 15.4%
5050614 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 36.0 3.12e-01 84.1% 43.6%
3966115 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.19e-01 92.1% 73.1%
4980065 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.51 42.0 2.45e-01 100.0% 71.3%
3553058 605.3.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.51 35.0 2.87e-01 74.6% 50.7%
3566729 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.51 36.0 3.00e-01 74.6% 69.1%
5056444 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.51 45.0 2.80e-01 100.0% 38.0%