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MT366760.1__QJT71027.1__GR7B_00229__00229

Bact-Vir

MT366760.1__QJT71027.1__GR7B_00229__00229

Identity

Accession:
MT366760 ↗
Kingdom:
phage

Quality

62.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR7B

TaxID: 2711165

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-154
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.62 40.0 3.94e-01 91.4% 60.2%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.72e-01 78.1% 79.3%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.81e-01 91.4% 68.5%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 44.0 3.68e-01 87.6% 77.8%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.55 44.0 3.29e-01 90.5% 89.2%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.74e-01 91.4% 67.9%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.51e-01 77.1% 77.2%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 47.0 3.46e-01 100.0% 66.4%
4wrnA03 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.52 43.0 3.64e-01 90.5% 59.8%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 36.0 3.66e-01 77.1% 73.5%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 41.0 3.34e-01 91.4% 94.6%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.44e-01 80.0% 74.7%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.50 38.0 2.70e-01 80.0% 71.5%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.50 40.0 3.88e-01 90.5% 75.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960795 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.64 28.0 4.12e-01 91.4% 95.6%
5073891 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 41.0 4.18e-01 77.1% 77.0%
3787512 331.4.1.4 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Fungal_KA1 0.55 41.0 3.92e-01 76.2% 68.1%
3396837 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 33.0 3.96e-01 98.1% 90.0%
3690818 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 42.0 3.93e-01 81.0% 86.9%
3261038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 3.41e-01 91.4% 66.7%
4156259 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 3.06e-01 83.8% 77.3%
4330094 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 31.0 3.36e-01 100.0% 67.8%
3244040 223.1.1.108 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.53 39.0 2.63e-01 79.0% 30.8%
1824160 395.1.1.2 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_N 0.53 25.0 2.92e-01 91.4% 60.9%
5007990 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 39.0 3.63e-01 81.0% 79.3%
3269021 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.66e-01 77.1% 85.7%
3526482 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 32.0 3.28e-01 77.1% 61.9%
4963337 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 39.0 3.66e-01 80.0% 92.3%
4945537 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.74e-01 80.0% 93.3%
4137378 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.60e-01 77.1% 84.8%
5041562 331.3.1.26 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 0.51 38.0 3.33e-01 78.1% 75.0%
4949740 223.1.1.76 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 0.51 37.0 3.73e-01 78.1% 96.4%
5055900 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 38.0 3.48e-01 80.0% 78.6%
5050577 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 38.0 3.57e-01 80.0% 85.4%
3181187 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.50 45.0 2.72e-01 100.0% 14.8%
4959104 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 37.0 3.65e-01 80.0% 94.8%