←Back to structures

MT366761.1__QJT71158.1__GR11A_00121__00120

Bact-Vir

MT366761.1__QJT71158.1__GR11A_00121__00120

Identity

Accession:
MT366761 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR11A

TaxID: 2711164

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-112
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 54.0 6.53e-01 90.9% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 50.0 5.88e-01 87.5% 85.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 52.0 5.92e-01 79.5% 89.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 52.0 5.81e-01 73.9% 86.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 6.42e-01 80.7% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 6.06e-01 77.3% 97.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 5.28e-01 71.6% 90.3%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.83e-01 76.1% 94.4%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.77e-01 83.0% 90.9%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.72 54.0 4.89e-01 80.7% 68.9%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.72 55.0 5.18e-01 80.7% 68.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.88e-01 77.3% 98.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 54.0 4.55e-01 81.8% 81.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.82e-01 79.5% 66.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.06e-01 70.5% 92.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 47.0 3.77e-01 71.6% 84.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.19e-01 90.9% 83.7%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 50.0 4.72e-01 80.7% 64.2%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 47.0 4.69e-01 79.5% 70.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.26e-01 81.8% 90.9%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 59.0 4.89e-01 98.9% 98.0%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.76e-01 92.0% 97.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 43.0 3.31e-01 71.6% 80.8%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 42.0 3.33e-01 70.5% 83.8%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.25e-01 84.1% 70.1%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 43.0 3.61e-01 73.9% 83.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 47.0 4.22e-01 84.1% 66.1%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 4.14e-01 81.8% 64.0%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.86e-01 80.7% 55.3%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 28.0 3.76e-01 85.2% 90.9%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.58 51.0 4.93e-01 94.3% 83.8%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.33e-01 72.7% 83.0%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 3.18e-01 89.8% 37.2%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 45.0 3.57e-01 87.5% 94.6%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.55 49.0 4.55e-01 96.6% 95.4%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.57e-01 84.1% 60.5%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.27e-01 75.0% 83.4%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 4.01e-01 81.8% 76.0%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.09e-01 75.0% 68.5%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 36.0 3.26e-01 70.5% 97.7%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 45.0 3.68e-01 96.6% 61.0%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.30e-01 80.7% 95.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 3.23e-01 81.8% 92.7%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 3.10e-01 77.3% 79.0%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.85e-01 95.5% 90.3%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 44.0 3.17e-01 96.6% 90.6%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 4.09e-01 94.3% 73.5%
2ediA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 43.0 3.58e-01 94.3% 75.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 39.0 2.69e-01 85.2% 83.1%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.88 53.0 6.15e-01 70.5% 83.1%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 55.0 5.64e-01 73.9% 69.4%
3421158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 55.0 6.63e-01 72.7% 98.3%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.83 54.0 5.90e-01 90.9% 78.7%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 55.0 6.00e-01 78.4% 81.3%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 50.0 6.28e-01 71.6% 100.0%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.81 55.0 6.16e-01 76.1% 88.6%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 57.0 5.46e-01 75.0% 65.0%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.80 61.0 6.35e-01 79.5% 96.2%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 54.0 5.81e-01 77.3% 81.3%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 6.00e-01 78.4% 82.5%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.78 54.0 6.17e-01 94.3% 95.5%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 6.32e-01 78.4% 100.0%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.77 53.0 5.75e-01 79.5% 84.0%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 53.0 5.57e-01 78.4% 78.8%
3741020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.67e-01 75.0% 85.7%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.82e-01 77.3% 88.6%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.76 54.0 5.95e-01 77.3% 90.3%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 54.0 5.49e-01 77.3% 76.5%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 59.0 6.32e-01 97.7% 96.0%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.75 56.0 5.32e-01 77.3% 71.0%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.51e-01 78.4% 80.0%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 6.18e-01 79.5% 100.0%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.61e-01 80.7% 78.9%
3812261 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.74 56.0 5.11e-01 79.5% 95.7%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.74 53.0 5.67e-01 80.7% 86.7%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.79e-01 88.6% 88.0%
3492016 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.73 55.0 5.52e-01 89.8% 76.7%
1005326 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.73 50.0 5.78e-01 76.1% 96.9%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.73 61.0 5.76e-01 96.6% 74.3%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.63e-01 90.9% 90.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 54.0 5.79e-01 77.3% 90.7%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.72 57.0 4.59e-01 81.8% 58.1%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 47.0 5.12e-01 79.5% 78.7%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 52.0 5.62e-01 75.0% 100.0%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 53.0 5.61e-01 77.3% 97.5%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.72 49.0 5.59e-01 78.4% 96.9%
3880508 4.1.1.129 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.71 55.0 5.35e-01 80.7% 77.9%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.71 56.0 4.57e-01 81.8% 56.7%
4208040 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 52.0 5.64e-01 77.3% 91.8%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.66e-01 77.3% 94.6%
3759446 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.71 52.0 5.19e-01 79.5% 74.4%
3170251 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.70 55.0 4.67e-01 83.0% 86.4%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 51.0 5.55e-01 77.3% 95.9%
3473205 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 4.48e-01 84.1% 70.6%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.20e-01 81.8% 86.0%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 53.0 4.46e-01 86.4% 50.0%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 62.0 5.07e-01 95.5% 95.3%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.14e-01 87.5% 41.3%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.42e-01 80.7% 90.6%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 57.0 4.74e-01 87.5% 59.3%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 50.0 5.23e-01 77.3% 98.8%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.61e-01 80.7% 61.6%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 50.0 5.19e-01 76.1% 87.5%
3673944 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 62.0 5.17e-01 100.0% 94.6%
2641775 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.67 50.0 4.29e-01 77.3% 52.2%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 56.0 5.76e-01 87.5% 94.0%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.67 50.0 4.98e-01 78.4% 80.0%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 49.0 5.29e-01 77.3% 92.0%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.67 48.0 5.34e-01 75.0% 98.5%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.67 48.0 5.42e-01 73.9% 100.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 54.0 5.26e-01 86.4% 87.4%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.67 49.0 5.06e-01 78.4% 87.1%
3263467 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 46.0 4.78e-01 70.5% 85.0%
4037095 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.66 46.0 3.78e-01 72.7% 82.4%
4417145 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.66 46.0 4.27e-01 72.7% 91.3%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 53.0 5.27e-01 86.4% 94.4%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 50.0 4.78e-01 80.7% 76.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 46.0 5.00e-01 73.9% 90.7%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 51.0 4.94e-01 85.2% 76.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.65 47.0 5.09e-01 76.1% 93.3%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 5.04e-01 81.8% 90.6%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.63 57.0 5.79e-01 95.5% 98.8%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 49.0 4.63e-01 85.2% 76.4%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 45.0 3.33e-01 75.0% 78.2%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 49.0 4.90e-01 85.2% 84.4%
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.62 47.0 4.91e-01 81.8% 91.3%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 4.92e-01 95.5% 76.7%
3521829 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.61 47.0 4.27e-01 81.8% 72.2%
4136160 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 53.0 5.13e-01 94.3% 96.0%
4015592 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.61 43.0 3.39e-01 75.0% 91.7%
3500806 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.60 42.0 3.40e-01 73.9% 96.7%
3722127 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.60 43.0 3.31e-01 75.0% 91.7%
3789459 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.60 44.0 3.49e-01 77.3% 94.4%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.56 47.0 3.90e-01 95.5% 60.9%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.54 42.0 2.97e-01 81.8% 48.4%
5016546 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 40.0 4.23e-01 79.5% 97.3%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.53 45.0 4.05e-01 96.6% 83.3%
D2 high residues 194-282
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.90 63.0 4.73e-01 71.9% 79.7%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 59.0 5.59e-01 71.9% 90.2%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.82 61.0 4.59e-01 77.5% 38.0%
3vvaA00 1.20.1260.140 Mainly Alpha › Up-down Bundle › Ferritin › Alternative oxidase 0.81 74.0 5.17e-01 98.9% 64.7%
5u1aL00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.80 65.0 5.21e-01 96.6% 46.4%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 59.0 5.56e-01 76.4% 84.6%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.79 60.0 3.66e-01 83.1% 14.3%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.79 54.0 5.16e-01 70.8% 66.7%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.79 57.0 4.85e-01 74.2% 84.2%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.78 71.0 4.79e-01 100.0% 80.3%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.78 61.0 5.43e-01 83.1% 65.9%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.78 68.0 5.69e-01 98.9% 57.6%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 58.0 5.20e-01 78.7% 80.0%
4mrsA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.77 65.0 4.33e-01 92.1% 74.3%
6p6jB01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.76 69.0 4.67e-01 100.0% 84.1%
4q4hA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.76 68.0 4.61e-01 100.0% 83.0%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 65.0 5.41e-01 95.5% 57.6%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.71 55.0 4.39e-01 82.0% 91.9%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.71 48.0 3.95e-01 70.8% 38.7%
2oc5A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 62.0 4.73e-01 100.0% 41.4%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.69 61.0 4.61e-01 97.8% 70.2%
2m6bA00 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.69 53.0 4.44e-01 82.0% 86.0%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 53.0 4.98e-01 83.1% 74.1%
2qvaA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.66 51.0 4.54e-01 83.1% 58.9%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 47.0 4.95e-01 86.5% 86.1%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.62 47.0 4.39e-01 82.0% 85.2%
1n1fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 51.0 4.38e-01 96.6% 85.6%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 44.0 3.83e-01 95.5% 82.0%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 46.0 4.34e-01 100.0% 98.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4608200 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.90 63.0 5.50e-01 71.9% 84.8%
3740071 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.84 60.0 4.70e-01 73.0% 61.8%
4949374 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.82 57.0 6.56e-01 80.9% 98.5%
3385717 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 64.0 5.06e-01 82.0% 97.6%
4192699 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.82 65.0 5.61e-01 83.1% 68.5%
4036632 192.15.1.47 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GvpK 0.80 61.0 6.01e-01 80.9% 76.8%
3690443 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.80 72.0 6.79e-01 96.6% 83.8%
4283760 1203.1.2.7 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR 0.80 72.0 6.08e-01 96.6% 67.1%
4683248 5086.1.1.66 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR 0.79 72.0 6.07e-01 97.8% 67.1%
4317199 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.78 65.0 5.70e-01 87.6% 73.6%
5080738 192.15.1.47 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GvpK 0.78 59.0 6.08e-01 80.9% 87.1%
3490726 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.78 69.0 5.13e-01 98.9% 72.4%
4010267 192.8.1.131 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR 0.78 70.0 6.07e-01 96.6% 72.3%
3428908 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 61.0 3.63e-01 83.1% 19.3%
3227781 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.77 64.0 5.96e-01 91.0% 76.4%
3391109 3684.1.1.21 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 0.76 54.0 4.61e-01 74.2% 95.7%
4008609 1203.1.2.7 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR 0.75 67.0 5.72e-01 96.6% 67.1%
4193109 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.74 65.0 3.65e-01 93.3% 21.6%
3720397 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.74 63.0 4.23e-01 93.3% 76.7%
4094257 150.3.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.72 64.0 5.64e-01 96.6% 68.5%
3935633 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.67 59.0 4.69e-01 97.8% 64.9%
3362472 605.1.1.132 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 0.66 60.0 5.55e-01 96.6% 81.8%
3503307 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.66 58.0 4.83e-01 100.0% 78.8%
3758339 5086.1.1.65 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › USHBP1_PDZ-bd 0.63 46.0 4.61e-01 76.4% 85.6%