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MT366761.1__QJT71260.1__GR11A_00223__00222

Bact-Vir

MT366761.1__QJT71260.1__GR11A_00223__00222

Identity

Accession:
MT366761 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VcorM_GR11A

TaxID: 2711164

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-110
PDB
Domain cluster: rep: MF975720.1__ATN93574.1__VW6S_22__00022__D103-185
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.73 53.0 4.37e-01 74.8% 76.4%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.71 62.0 4.86e-01 92.5% 99.1%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.71 57.0 4.88e-01 85.0% 78.9%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 46.0 4.41e-01 71.0% 85.4%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 45.0 4.09e-01 71.0% 85.1%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 45.0 3.94e-01 71.0% 92.9%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 42.0 3.99e-01 71.0% 98.4%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 41.0 3.69e-01 70.1% 86.5%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 3.77e-01 71.0% 98.5%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 48.0 4.66e-01 88.8% 96.6%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 4.23e-01 90.7% 93.8%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.58 40.0 3.50e-01 71.0% 94.4%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.69e-01 75.7% 85.8%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 4.25e-01 77.6% 92.7%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 4.24e-01 77.6% 92.0%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.57 39.0 3.43e-01 70.1% 76.9%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.56 44.0 4.22e-01 83.2% 95.9%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 3.54e-01 73.8% 59.5%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 38.0 2.85e-01 71.0% 48.5%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 37.0 3.45e-01 70.1% 92.6%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.35e-01 74.8% 57.4%
1zvcA00 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.54 44.0 3.81e-01 89.7% 94.7%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 4.08e-01 88.8% 93.9%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.53 48.0 3.72e-01 99.1% 72.9%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 43.0 3.05e-01 88.8% 99.4%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 3.07e-01 82.2% 65.9%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 3.37e-01 87.9% 97.2%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 3.05e-01 82.2% 62.4%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 3.11e-01 97.2% 50.0%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 39.0 3.68e-01 81.3% 85.6%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.14e-01 98.1% 65.2%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 46.0 3.56e-01 100.0% 72.3%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 46.0 3.70e-01 99.1% 97.1%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 45.0 3.49e-01 100.0% 71.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.85 59.0 6.74e-01 84.1% 95.0%
5028251 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.78 60.0 5.94e-01 79.4% 91.8%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.78 62.0 6.29e-01 83.2% 92.4%
3628460 3308.1.1.0 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.76 45.0 5.14e-01 79.4% 78.8%
5028252 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.75 58.0 6.04e-01 81.3% 92.0%
862806 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.71 60.0 4.72e-01 90.7% 97.7%
5016827 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.70 54.0 5.29e-01 84.1% 73.9%
3937491 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 48.0 4.44e-01 70.1% 100.0%
4222079 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.68 49.0 4.18e-01 74.8% 94.5%
3720297 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.67 47.0 4.01e-01 71.0% 90.6%
4110452 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.67 49.0 4.15e-01 74.8% 95.2%
4042211 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.67 49.0 4.14e-01 74.8% 93.9%
3786823 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.66 48.0 4.12e-01 74.8% 96.4%
3279595 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.66 45.0 3.87e-01 70.1% 91.3%
3579433 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.66 45.0 3.87e-01 70.1% 91.3%
1172098 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.65 45.0 3.96e-01 71.0% 94.1%
3278704 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.64 46.0 5.19e-01 86.0% 98.8%
3164281 5069.1.1.92 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C 0.64 49.0 5.11e-01 83.2% 94.0%
4966144 3454.1.1.9 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PF26687 0.62 39.0 4.57e-01 81.3% 95.7%
5082048 4200.1.1.0 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like 0.61 52.0 4.29e-01 92.5% 100.0%
3409138 222.1.1.35 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas, MFE-2_hydrat-2_N 0.61 44.0 3.15e-01 75.7% 63.1%
4003224 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.60 54.0 4.57e-01 100.0% 73.3%
3275455 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 49.0 4.70e-01 87.9% 76.7%
4342757 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.60 45.0 3.85e-01 76.6% 96.9%
3599539 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.59 45.0 3.91e-01 80.4% 97.0%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.58 49.0 3.89e-01 90.7% 98.6%
4942481 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.58 44.0 3.88e-01 79.4% 100.0%
3797694 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 50.0 4.30e-01 100.0% 78.3%
3997170 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.57 50.0 4.27e-01 100.0% 79.5%
5012521 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 48.0 3.74e-01 93.5% 97.4%
4106038 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 40.0 3.30e-01 72.9% 72.3%
1513088 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.56 49.0 3.91e-01 93.5% 85.6%
4061415 4252.1.1.5 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.55 46.0 3.83e-01 90.7% 94.2%
3279685 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.55 47.0 3.78e-01 90.7% 94.5%
5041380 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.54 46.0 3.77e-01 91.6% 87.7%
3238997 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 4.23e-01 90.7% 98.5%
3267620 11.1.5.62 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.54 37.0 3.64e-01 70.1% 94.7%
3218206 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 46.0 4.01e-01 100.0% 83.3%
None — 0.53 47.0 3.40e-01 99.1% 72.4%
3204864 5.1.11.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.53 48.0 3.15e-01 100.0% 44.9%
4025486 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.52 41.0 3.81e-01 85.0% 92.1%
3593551 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 37.0 3.83e-01 92.5% 80.0%
3734800 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.52 46.0 3.04e-01 99.1% 90.1%
3972797 4321.1.1.1 ↗ a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298 0.51 39.0 3.08e-01 80.4% 85.7%
3995219 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.08e-01 100.0% 83.3%
4142302 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.50 43.0 3.10e-01 96.3% 55.5%