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MT366943.1__QKN87347.1__vBYenM646_03__00003

Bact-Vir

MT366943.1__QKN87347.1__vBYenM646_03__00003

Identity

Accession:
MT366943 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_vB_YenM_646

TaxID: 2736221

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: rep: NC_073322.1__YP_010749482.1__QCF77_gp53__00053__D2-61
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 52.0 4.37e-01 85.5% 83.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.95e-01 100.0% 90.6%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 54.0 4.42e-01 100.0% 85.1%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 44.0 2.86e-01 85.5% 36.2%
4ihzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 47.0 3.69e-01 100.0% 93.3%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.58 49.0 4.24e-01 100.0% 89.6%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 48.0 4.11e-01 100.0% 71.8%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 52.0 4.59e-01 98.4% 72.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 4.33e-01 91.9% 83.6%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 45.0 3.68e-01 90.3% 84.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.16e-01 100.0% 75.0%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.83e-01 88.7% 39.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.42e-01 98.4% 84.6%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 39.0 3.25e-01 74.2% 53.7%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.90e-01 88.7% 80.9%
3picA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 42.0 2.70e-01 88.7% 30.4%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.67e-01 83.9% 82.6%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.97e-01 85.5% 76.1%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.54 45.0 3.00e-01 100.0% 80.7%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.54 37.0 3.79e-01 71.0% 79.3%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 4.06e-01 83.9% 100.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.53 44.0 3.60e-01 100.0% 77.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.90e-01 93.5% 96.4%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.64e-01 75.8% 99.1%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 43.0 2.94e-01 90.3% 90.0%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 46.0 3.97e-01 100.0% 74.0%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.53 40.0 2.67e-01 85.5% 45.2%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 39.0 4.01e-01 87.1% 89.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 3.60e-01 90.3% 87.6%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.59e-01 100.0% 53.1%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 36.0 2.40e-01 72.6% 45.5%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.54e-01 100.0% 51.8%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 45.0 3.83e-01 98.4% 81.6%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 44.0 3.81e-01 100.0% 75.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.27e-01 98.4% 54.4%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.52 33.0 3.41e-01 85.5% 67.2%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.91e-01 96.8% 86.4%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 3.66e-01 100.0% 69.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 43.0 3.25e-01 100.0% 67.8%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 44.0 3.72e-01 98.4% 81.7%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 43.0 3.60e-01 96.8% 80.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.25e-01 91.9% 60.9%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.67e-01 100.0% 71.8%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.24e-01 100.0% 46.0%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.48e-01 100.0% 58.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221612 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.64 49.0 3.35e-01 83.9% 77.8%
2665337 3264.1.1.0 ↗ 0.63 50.0 3.72e-01 88.7% 79.5%
1290695 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 49.0 4.27e-01 91.9% 93.1%
3785709 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.61 50.0 3.10e-01 95.2% 34.2%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.61 52.0 4.56e-01 100.0% 63.8%
3404988 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 47.0 3.77e-01 88.7% 93.3%
4887360 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 38.0 3.90e-01 91.9% 66.7%
5014319 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 40.0 3.95e-01 87.1% 64.7%
3383999 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 50.0 3.36e-01 98.4% 31.3%
1124186 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.59 47.0 3.90e-01 90.3% 90.7%
3164017 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.59 50.0 4.50e-01 100.0% 86.7%
4959385 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 47.0 4.49e-01 91.9% 96.0%
3370663 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.58 42.0 4.34e-01 90.3% 83.1%
3478270 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 46.0 2.78e-01 95.2% 45.0%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.57 45.0 3.93e-01 87.1% 89.5%
3966450 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.57 44.0 3.72e-01 88.7% 93.0%
3588663 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.56 47.0 4.23e-01 100.0% 93.7%
6322 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 44.0 3.33e-01 98.4% 35.0%
4929704 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.55 44.0 3.46e-01 90.3% 83.6%
4870694 7579.1.1.49 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.55 42.0 2.77e-01 88.7% 36.0%
5033737 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 37.0 2.66e-01 80.6% 22.9%
3575893 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.54 41.0 3.71e-01 90.3% 86.3%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.53 45.0 3.15e-01 100.0% 42.2%
4969870 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 41.0 2.59e-01 85.5% 30.3%
3593972 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.53 36.0 3.69e-01 71.0% 88.3%
5010004 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.53 45.0 3.80e-01 98.4% 85.5%
4889522 3321.1.1.2 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › DNA_pol_B_N 0.53 42.0 3.59e-01 93.5% 66.1%
3842643 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 47.0 3.71e-01 100.0% 59.2%
852 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.52 45.0 3.54e-01 100.0% 51.8%
4210311 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 45.0 3.81e-01 98.4% 77.8%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.52 45.0 4.17e-01 100.0% 80.0%
4460376 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.52 36.0 2.99e-01 74.2% 65.0%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.51 40.0 3.78e-01 95.2% 92.9%
3517695 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.51 38.0 2.37e-01 85.5% 19.8%
5032782 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.51 43.0 3.87e-01 98.4% 72.2%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 40.0 3.61e-01 91.9% 85.3%
3777778 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 39.0 2.70e-01 88.7% 51.0%
3884178 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.51 38.0 3.59e-01 80.6% 77.3%
3793075 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 43.0 3.45e-01 100.0% 54.8%
3937758 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 44.0 3.68e-01 100.0% 61.9%
5023980 298.3.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.51 39.0 3.28e-01 93.5% 91.5%
3227340 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 45.0 3.39e-01 100.0% 50.7%
3230771 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 44.0 3.93e-01 100.0% 72.2%