←Back to structures
MT366943.1__QKN87354.1__vBYenM646_10__00010
Bact-VirMT366943.1__QKN87354.1__vBYenM646_10__00010
Identity
- Accession:
- MT366943 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.78 | 55.0 | 5.08e-01 | 74.5% | 59.2% |
| 4i14A02 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.77 | 53.0 | 4.06e-01 | 72.7% | 69.0% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.76 | 54.0 | 5.18e-01 | 74.5% | 68.3% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.76 | 54.0 | 4.55e-01 | 76.4% | 53.7% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.76 | 53.0 | 4.63e-01 | 76.4% | 48.8% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.76 | 55.0 | 4.78e-01 | 78.2% | 61.9% |
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.75 | 57.0 | 5.44e-01 | 85.5% | 69.2% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 63.0 | 4.65e-01 | 98.2% | 37.6% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.71 | 44.0 | 3.29e-01 | 83.6% | 26.1% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.71 | 55.0 | 4.39e-01 | 87.3% | 44.9% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.71 | 51.0 | 3.36e-01 | 78.2% | 22.0% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.71 | 61.0 | 4.90e-01 | 100.0% | 75.2% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.70 | 62.0 | 5.37e-01 | 100.0% | 89.4% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.70 | 54.0 | 4.99e-01 | 85.5% | 77.5% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.70 | 61.0 | 3.61e-01 | 100.0% | 17.3% |
| 1uv4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.68 | 59.0 | 3.74e-01 | 100.0% | 36.8% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 58.0 | 3.60e-01 | 100.0% | 22.4% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.67 | 54.0 | 3.91e-01 | 90.9% | 31.9% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 57.0 | 3.46e-01 | 98.2% | 17.5% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 57.0 | 3.49e-01 | 100.0% | 20.1% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.66 | 44.0 | 3.40e-01 | 70.9% | 86.9% |
| 2wxwA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.65 | 49.0 | 3.55e-01 | 83.6% | 54.4% |
| 3i6eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 48.0 | 4.08e-01 | 85.5% | 54.4% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.65 | 54.0 | 3.43e-01 | 100.0% | 26.4% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 52.0 | 3.29e-01 | 90.9% | 40.1% |
| 1kb0A01 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.64 | 53.0 | 3.09e-01 | 100.0% | 21.9% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 55.0 | 3.23e-01 | 100.0% | 20.2% |
| 3cawA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 49.0 | 4.26e-01 | 89.1% | 90.1% |
| 5jozA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 53.0 | 3.37e-01 | 100.0% | 31.5% |
| 1a87A01 | 3.30.1120.60 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin | 0.62 | 53.0 | 4.43e-01 | 96.4% | 77.3% |
| 1e69A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 45.0 | 2.91e-01 | 100.0% | 16.3% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 54.0 | 4.65e-01 | 100.0% | 85.6% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 53.0 | 4.25e-01 | 100.0% | 89.7% |
| 5ch5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 48.0 | 2.83e-01 | 98.2% | 31.8% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.58 | 47.0 | 3.52e-01 | 96.4% | 62.3% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.58 | 48.0 | 4.13e-01 | 98.2% | 62.2% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 37.0 | 3.58e-01 | 96.4% | 54.4% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 49.0 | 3.76e-01 | 100.0% | 68.9% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 43.0 | 3.42e-01 | 100.0% | 37.4% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 46.0 | 4.17e-01 | 100.0% | 87.5% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.52 | 42.0 | 4.22e-01 | 96.4% | 94.7% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 40.0 | 3.97e-01 | 92.7% | 89.8% |
| 3g7kB02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 41.0 | 2.98e-01 | 98.2% | 43.1% |
| 2i3dB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 42.0 | 2.86e-01 | 96.4% | 42.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284714 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.77 | 58.0 | 5.59e-01 | 81.8% | 74.6% |
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.75 | 58.0 | 5.66e-01 | 83.6% | 80.0% |
| 1171960 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.74 | 63.0 | 5.62e-01 | 100.0% | 67.9% |
| 4970384 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.72 | 51.0 | 4.47e-01 | 76.4% | 75.3% |
| 5012352 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.72 | 58.0 | 5.02e-01 | 89.1% | 58.8% |
| 3781182 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 63.0 | 3.69e-01 | 100.0% | 18.4% |
| 3739384 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.71 | 61.0 | 5.07e-01 | 98.2% | 82.8% |
| 5043543 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.70 | 62.0 | 3.94e-01 | 100.0% | 29.6% |
| 3371877 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 60.0 | 3.66e-01 | 100.0% | 19.7% |
| 3535431 | 5.1.3.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF | 0.69 | 60.0 | 3.83e-01 | 100.0% | 24.6% |
| 3659277 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.69 | 61.0 | 3.73e-01 | 100.0% | 23.3% |
| 3765955 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.69 | 59.0 | 3.46e-01 | 96.4% | 15.9% |
| 4854908 | 5.1.4.325 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 | 0.69 | 50.0 | 4.64e-01 | 78.2% | 61.4% |
| 3613171 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.69 | 60.0 | 4.13e-01 | 100.0% | 38.4% |
| 4152362 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.68 | 50.0 | 4.03e-01 | 98.2% | 40.0% |
| 3923801 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 50.0 | 4.26e-01 | 81.8% | 52.6% |
| 3851509 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.68 | 59.0 | 3.42e-01 | 100.0% | 15.4% |
| 3438347 | 5.1.5.63 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 | 0.68 | 58.0 | 4.39e-01 | 100.0% | 55.7% |
| 3716610 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 53.0 | 4.49e-01 | 90.9% | 79.0% |
| 3645007 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.67 | 58.0 | 5.07e-01 | 98.2% | 78.8% |
| 3850814 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.67 | 57.0 | 3.40e-01 | 100.0% | 22.4% |
| 3541856 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.66 | 56.0 | 4.14e-01 | 96.4% | 39.3% |
| 4944430 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.66 | 56.0 | 5.06e-01 | 100.0% | 68.8% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.65 | 53.0 | 4.53e-01 | 90.9% | 70.0% |
| 3294867 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.65 | 57.0 | 4.80e-01 | 100.0% | 92.6% |
| 5031271 | 850.1.1.2 ↗ | a+b three layers › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › DUF1805 | 0.65 | 56.0 | 4.82e-01 | 98.2% | 96.6% |
| 4423214 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 51.0 | 4.25e-01 | 90.9% | 58.1% |
| 3585836 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.64 | 55.0 | 3.52e-01 | 98.2% | 28.1% |
| 4929818 | 861.1.1.0 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein | 0.64 | 53.0 | 4.10e-01 | 98.2% | 100.0% |
| 5047128 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.64 | 55.0 | 4.39e-01 | 96.4% | 94.5% |
| 3738698 | 213.1.1.6 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ | 0.63 | 55.0 | 4.32e-01 | 100.0% | 58.3% |
| 4875124 | 10.1.1.14 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 | 0.63 | 53.0 | 3.63e-01 | 100.0% | 30.2% |
| 6687 | 5105.1.1.0 ↗ | 0.62 | 53.0 | 4.41e-01 | 96.4% | 76.5% | |
| 4981192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 50.0 | 3.22e-01 | 89.1% | 55.3% |
| 3770717 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.61 | 49.0 | 3.10e-01 | 96.4% | 22.4% |
| 5081878 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 46.0 | 2.86e-01 | 85.5% | 42.8% |
| 3446029 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.59 | 51.0 | 3.77e-01 | 100.0% | 43.2% |
| 3361063 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.58 | 47.0 | 3.19e-01 | 100.0% | 30.0% |
| 3597513 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.20e-01 | 96.4% | 80.0% |
| 3626212 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 43.0 | 3.18e-01 | 85.5% | 36.1% |
| 3300848 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.56 | 37.0 | 3.13e-01 | 96.4% | 36.9% |
| 4929797 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.53 | 45.0 | 4.44e-01 | 100.0% | 91.5% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 39.0 | 3.42e-01 | 100.0% | 52.9% |
| 3293481 | 861.1.1.1 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi | 0.52 | 39.0 | 3.12e-01 | 87.3% | 98.4% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.50 | 40.0 | 3.69e-01 | 98.2% | 82.5% |