←Back to structures

MT366943.1__QKN87361.1__vBYenM646_17__00017

Bact-Vir

MT366943.1__QKN87361.1__vBYenM646_17__00017

Identity

Accession:
MT366943 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_vB_YenM_646

TaxID: 2736221

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-93
PDB
Domain cluster: rep: MG250483.1__AUE22654.1__Ah1_00113__00113__D5-86
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 34.0 3.71e-01 91.2% 66.2%
1a44A00 3.90.280.10 Alpha Beta › Alpha-Beta Complex › Phosphatidylethanolamine-binding Protein › PEBP-like 0.54 38.0 3.05e-01 73.6% 73.0%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 45.0 4.18e-01 96.7% 87.4%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.99e-01 73.6% 86.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.13e-01 96.7% 95.3%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 46.0 3.35e-01 100.0% 43.6%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.01e-01 95.6% 93.3%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 44.0 3.23e-01 98.9% 46.8%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.51 26.0 3.05e-01 73.6% 70.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 44.0 3.28e-01 100.0% 43.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965613 243.6.1.15 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF7122 0.63 40.0 4.08e-01 70.3% 64.4%
5003448 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.41e-01 71.4% 85.6%
3965967 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 31.0 3.10e-01 72.5% 52.0%
5036474 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.53 26.0 2.61e-01 70.3% 41.1%
D2 medium residues 106-186
PDB
Domain cluster: rep: KC460990.1__AGN89462.1__Eta_0016__00016__D85-171
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.38e-01 75.3% 73.4%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 40.0 3.49e-01 70.4% 78.1%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.54 43.0 3.34e-01 86.4% 58.3%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 2.97e-01 74.1% 71.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.59e-01 87.7% 86.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.98e-01 70.4% 80.6%
3492982 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 47.0 3.93e-01 70.4% 68.9%
3498280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 3.97e-01 70.4% 71.5%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.99e-01 76.5% 87.1%
None — 0.65 57.0 3.28e-01 96.3% 94.4%
None — 0.63 54.0 3.11e-01 95.1% 92.4%
3733375 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.51 35.0 2.68e-01 70.4% 87.5%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 34.0 3.24e-01 88.9% 57.9%
3366726 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.50 35.0 2.64e-01 71.6% 86.5%