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MT374853.1__QKE55382.1__vBYpM5_00004__00004

Bact-Vir

MT374853.1__QKE55382.1__vBYpM5_00004__00004

Identity

Accession:
MT374853 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muvirus› Yersinia_phage_vB_YpM_5

TaxID: 2736201

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-132
PDB
Domain cluster: rep: NC_007149.1__YP_249596.1__VVP4_p28__00028__D493-632
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.72 40.0 4.14e-01 88.8% 57.8%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.67 52.0 4.67e-01 85.6% 59.3%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.66 44.0 4.57e-01 89.6% 72.4%
3rbgD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 42.0 4.60e-01 86.4% 79.6%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 41.0 4.65e-01 86.4% 84.2%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 3.98e-01 86.4% 69.1%
1x44A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 3.89e-01 86.4% 68.9%
5t89X05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.41e-01 86.4% 80.0%
2enyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 3.90e-01 86.4% 69.2%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.58e-01 86.4% 83.9%
6hciB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 4.06e-01 86.4% 75.8%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.40e-01 86.4% 83.0%
5f1sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.20e-01 86.4% 80.4%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 4.15e-01 86.4% 80.0%
1nezH00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.50e-01 86.4% 81.7%
1fhgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.92e-01 86.4% 73.5%
5edxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.53e-01 86.4% 84.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 37.0 4.18e-01 89.6% 83.3%
2kdgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.93e-01 86.4% 75.0%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.44e-01 81.6% 87.3%
4jfhE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.37e-01 86.4% 81.7%
2ahoB03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.58 39.0 4.59e-01 82.4% 100.0%
4ye4L01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 4.49e-01 88.0% 86.7%
5swsE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.36e-01 88.0% 86.5%
1vcaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.79e-01 86.4% 79.8%
2r15A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.82e-01 86.4% 77.1%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 4.28e-01 87.2% 74.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.96e-01 88.0% 65.2%
1kv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.98e-01 91.2% 80.2%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.76e-01 88.8% 64.4%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.78e-01 89.6% 65.3%
1l9mA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.11e-01 90.4% 73.9%
5iqlA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.54 36.0 3.64e-01 92.0% 66.2%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 4.13e-01 78.4% 90.6%
2okxA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 4.03e-01 95.2% 68.9%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.83e-01 75.2% 87.0%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.40e-01 90.4% 48.6%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 39.0 3.19e-01 83.2% 80.0%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 35.0 3.38e-01 70.4% 95.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.86 80.0 7.37e-01 98.4% 89.7%
3846901 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.67 42.0 4.84e-01 76.8% 87.8%
3859388 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.65 44.0 4.83e-01 77.6% 85.9%
3882734 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.64 42.0 4.52e-01 77.6% 79.0%
3568964 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 41.0 4.71e-01 76.8% 90.0%
3999001 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.63 44.0 4.76e-01 87.2% 84.8%
3866543 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 40.0 4.53e-01 78.4% 84.2%
3937146 11.1.1.972 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29592 0.63 40.0 4.04e-01 87.2% 63.7%
3916385 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 46.0 4.91e-01 83.2% 90.5%
3854366 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.62 41.0 4.42e-01 77.6% 80.0%
3528381 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.60 41.0 4.57e-01 78.4% 91.5%
3862084 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.60 40.0 4.15e-01 78.4% 70.8%
3575231 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 36.0 3.36e-01 86.4% 45.5%
4000787 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 37.0 4.03e-01 85.6% 76.0%
3824377 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.59 49.0 4.14e-01 87.2% 81.5%
3580657 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 37.0 4.02e-01 88.0% 77.0%
3631558 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.58 47.0 3.61e-01 88.8% 95.7%
3282528 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.57 43.0 3.57e-01 78.4% 63.7%
4021309 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.57 46.0 3.72e-01 87.2% 71.1%
3229295 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.57 41.0 3.39e-01 76.0% 75.7%
3935368 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 35.0 3.58e-01 86.4% 63.3%
3353445 71.1.1.14 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 0.56 40.0 3.17e-01 72.8% 89.5%
3769191 71.1.1.14 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 0.56 40.0 3.12e-01 72.8% 86.9%
3660680 109.3.1.348 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ANKRD13_C 0.55 40.0 2.73e-01 73.6% 61.8%
3780146 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.54 44.0 4.34e-01 88.0% 83.7%
1162909 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 37.0 4.11e-01 100.0% 93.5%
4978098 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 45.0 3.98e-01 89.6% 70.6%
4564428 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 3.44e-01 92.8% 49.7%
3692007 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 44.0 4.18e-01 87.2% 89.0%
3579545 11.1.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.54 42.0 4.00e-01 100.0% 71.7%
3832214 10.1.1.63 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Methyltransf_FA 0.53 45.0 4.14e-01 92.0% 86.1%
3287532 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 31.0 3.45e-01 90.4% 72.0%
3511194 11.1.1.842 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 40.0 3.96e-01 99.2% 75.4%
3936420 11.1.1.842 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 39.0 3.98e-01 99.2% 80.0%
3406725 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 42.0 3.30e-01 86.4% 99.3%
4209070 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.52 43.0 3.79e-01 89.6% 67.0%
3616027 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 37.0 3.88e-01 74.4% 99.1%
3993079 11.1.1.842 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.52 37.0 3.85e-01 100.0% 79.2%
3780635 10.32.1.184 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II 0.52 41.0 3.91e-01 84.0% 73.8%
5055486 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 32.0 3.71e-01 84.0% 89.4%
3219365 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 40.0 4.34e-01 88.0% 99.0%
3661717 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 38.0 3.12e-01 76.8% 72.6%
3413099 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 33.0 3.62e-01 73.6% 80.0%
3914048 11.2.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS 0.51 34.0 3.30e-01 92.0% 57.7%
3166546 11.2.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS 0.50 35.0 3.45e-01 72.8% 93.6%
4942630 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 32.0 3.49e-01 96.8% 78.0%
4403708 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.50 36.0 3.73e-01 79.2% 80.9%
D2 high residues 159-222
PDB
Domain cluster: rep: OK254197.1__UIS66033.1__X__00020__D606-663
D3 high residues 231-287
PDB
Domain cluster: rep: NC_079179.1__YP_010844740.1__QNH00_gp79__00079__D392-447