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MT375521.1__QLF88042.1__Eistla_gp19__00019

Bact-Vir

MT375521.1__QLF88042.1__Eistla_gp19__00019

Identity

Accession:
MT375521 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagivirus› Pelagibacter_phage_Eistla_EXVC025P

TaxID: 2736226

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: rep: OR420735.1__WMM94937.1__HTVC168P_gp7__00007__D2-51
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.68 48.0 3.81e-01 98.1% 35.1%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 48.0 4.00e-01 98.1% 43.3%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.65 48.0 3.55e-01 96.2% 28.3%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 44.0 3.71e-01 98.1% 38.8%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 49.0 3.28e-01 98.1% 56.6%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.59 43.0 2.86e-01 78.8% 88.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.33e-01 98.1% 35.9%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 36.0 2.62e-01 73.1% 18.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 48.0 3.95e-01 98.1% 89.2%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.05e-01 98.1% 26.9%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 41.0 2.48e-01 82.7% 34.9%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.63e-01 92.3% 58.7%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 46.0 3.47e-01 98.1% 54.1%
1rvkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 37.0 2.94e-01 98.1% 31.0%
2wdqA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.55 35.0 3.76e-01 80.8% 80.5%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.55 42.0 2.75e-01 86.5% 67.8%
2oplA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 39.0 2.81e-01 78.8% 78.5%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 38.0 2.53e-01 100.0% 17.5%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 45.0 3.28e-01 100.0% 53.0%
1aalB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.53 33.0 3.20e-01 90.4% 56.1%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.53 32.0 3.14e-01 90.4% 54.2%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 44.0 2.86e-01 94.2% 90.9%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 41.0 2.82e-01 100.0% 41.8%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 31.0 3.14e-01 90.4% 59.3%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.51 35.0 2.47e-01 73.1% 20.5%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 33.0 2.95e-01 75.0% 39.8%
3bwnD01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.19e-01 98.1% 89.6%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 42.0 3.26e-01 96.2% 58.4%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.40e-01 98.1% 92.9%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.09e-01 100.0% 57.9%
4qclA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 39.0 2.59e-01 94.2% 80.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3224950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 41.0 3.35e-01 98.1% 33.3%
4938355 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 45.0 3.33e-01 76.9% 82.1%
147620 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.62 39.0 3.31e-01 100.0% 35.1%
3496677 3315.1.1.1 ↗ a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.60 38.0 3.05e-01 73.1% 28.7%
5035496 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.59 51.0 3.26e-01 96.2% 88.6%
4403587 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.59 38.0 3.31e-01 98.1% 40.0%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 46.0 3.13e-01 90.4% 84.9%
3834903 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.58 47.0 3.87e-01 92.3% 63.0%
5067682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.92e-01 90.4% 54.4%
3402269 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.58 47.0 3.76e-01 94.2% 66.4%
3825952 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 43.0 3.55e-01 96.2% 42.9%
3957089 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.18e-01 92.3% 91.4%
3752218 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.57 35.0 3.18e-01 90.4% 45.7%
4625119 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.57 46.0 3.96e-01 94.2% 71.9%
4126255 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.57 45.0 2.92e-01 92.3% 45.8%
4666185 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 47.0 2.82e-01 98.1% 33.7%
3614143 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.56 42.0 3.33e-01 90.4% 36.3%
4026256 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 40.0 2.62e-01 78.8% 69.0%
3824961 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 39.0 3.21e-01 100.0% 36.4%
3967659 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.56 36.0 2.42e-01 88.5% 17.4%
4361292 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 44.0 2.66e-01 96.2% 34.5%
4983372 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.55 47.0 3.10e-01 100.0% 48.8%
4996611 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.55 42.0 2.99e-01 82.7% 72.0%
5043348 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 45.0 3.28e-01 100.0% 72.9%
3080542 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.54 37.0 3.15e-01 73.1% 89.0%
3472858 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.53 39.0 3.55e-01 80.8% 80.8%
4974067 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 43.0 3.18e-01 94.2% 81.9%
3958829 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 37.0 2.47e-01 76.9% 23.2%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.52 36.0 2.48e-01 76.9% 50.5%
4187457 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.52 38.0 2.91e-01 80.8% 34.6%
4242930 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.52 36.0 3.10e-01 75.0% 96.7%
2141918 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 37.0 2.54e-01 76.9% 27.4%
3232066 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 40.0 2.54e-01 98.1% 26.1%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.51 37.0 2.44e-01 84.6% 16.1%
4351239 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.51 38.0 2.90e-01 82.7% 34.6%
3225904 7084.1.1.1 ↗ few secondary structure elements › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › PF28734 0.51 37.0 3.19e-01 100.0% 45.3%
3926977 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 40.0 3.20e-01 96.2% 98.4%
3487940 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.50 39.0 3.52e-01 94.2% 77.6%
4090099 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.50 36.0 3.18e-01 82.7% 93.3%