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MT375521.1__QLF88043.1__Eistla_gp20__00020

Bact-Vir

MT375521.1__QLF88043.1__Eistla_gp20__00020

Identity

Accession:
MT375521 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagivirus› Pelagibacter_phage_Eistla_EXVC025P

TaxID: 2736226

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 41.0 4.06e-01 81.5% 65.2%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.60 35.0 3.39e-01 86.2% 49.3%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 34.0 3.15e-01 72.3% 42.9%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 38.0 4.38e-01 87.7% 95.6%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 3.84e-01 100.0% 70.7%
3m3iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 50.0 3.69e-01 96.9% 67.4%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.65e-01 96.9% 65.2%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 39.0 4.26e-01 100.0% 94.2%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 38.0 3.02e-01 100.0% 32.3%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 46.0 4.13e-01 100.0% 69.1%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 40.0 3.78e-01 100.0% 64.8%
3tw8A03 6.10.140.1000 Special › Helix non-globular › Helix Hairpins › 0.51 31.0 3.78e-01 98.5% 97.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3663415 375.1.1.64 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.68 47.0 4.86e-01 86.2% 78.3%
3352699 375.1.1.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin 0.68 47.0 5.12e-01 86.2% 94.0%
4960524 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 44.0 4.99e-01 73.8% 97.8%
5057952 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.63 40.0 4.02e-01 73.8% 63.1%
4026153 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 43.0 4.33e-01 98.5% 76.9%
3253680 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.58 38.0 3.61e-01 81.5% 53.0%
4026823 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 4.27e-01 92.3% 100.0%
3616359 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 42.0 3.98e-01 100.0% 63.7%
3766036 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 38.0 3.84e-01 93.8% 69.2%
3614660 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.56 40.0 2.66e-01 75.4% 65.9%
3256523 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.56 43.0 4.18e-01 100.0% 76.0%
3597386 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 41.0 3.63e-01 100.0% 52.4%
3713646 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 45.0 3.96e-01 100.0% 76.4%
3817446 2006.1.3.21 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C 0.55 46.0 3.47e-01 100.0% 63.3%
3843603 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.54 32.0 2.37e-01 73.8% 21.7%
4979655 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.54 36.0 3.02e-01 70.8% 65.6%
3246864 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 41.0 3.48e-01 100.0% 49.6%
3524127 192.29.1.198 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › zf-B_box 0.52 32.0 2.42e-01 76.9% 21.1%
2393285 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.53e-01 84.6% 82.4%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 39.0 4.08e-01 98.5% 98.3%
3571103 4081.1.1.8 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.50 43.0 3.05e-01 100.0% 96.7%