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MT375522.1__QLF88089.1__Venkman_gp14__00014

Bact-Vir

MT375522.1__QLF88089.1__Venkman_gp14__00014

Identity

Accession:
MT375522 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 51.0 3.83e-01 95.5% 65.5%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 4.36e-01 91.0% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508394 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 2.95e-01 94.0% 32.4%
3946052 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.52 45.0 2.87e-01 98.5% 40.0%
5001217 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 41.0 4.04e-01 92.5% 82.7%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.29e-01 97.0% 49.4%
D2 medium residues 71-139
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 47.0 4.29e-01 82.6% 55.4%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 44.0 4.33e-01 76.8% 65.8%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.62 47.0 4.86e-01 79.7% 87.3%
1x4xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 3.55e-01 81.2% 45.3%
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.60 40.0 3.79e-01 82.6% 57.3%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 3.45e-01 82.6% 41.9%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 4.08e-01 84.1% 68.6%
4p2qE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.86e-01 82.6% 62.1%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.60 42.0 3.73e-01 82.6% 51.5%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 39.0 3.55e-01 79.7% 49.0%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 44.0 3.06e-01 81.2% 41.5%
4eiuA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.58 40.0 3.54e-01 85.5% 47.6%
5swsE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.79e-01 82.6% 64.0%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.76e-01 79.7% 64.4%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 3.81e-01 78.3% 74.0%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 3.35e-01 81.2% 39.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.57 40.0 4.13e-01 81.2% 77.3%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.67e-01 85.5% 52.5%
6orhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 37.0 3.23e-01 81.2% 41.0%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.56 42.0 3.35e-01 82.6% 59.1%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.56 42.0 3.66e-01 84.1% 50.9%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 43.0 3.04e-01 85.5% 88.1%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 38.0 2.95e-01 71.0% 79.3%
2okqB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.59e-01 84.1% 97.5%
1ah1A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.49e-01 84.1% 55.0%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 40.0 3.14e-01 78.3% 54.1%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.43e-01 82.6% 53.8%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 3.99e-01 88.4% 70.8%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.48e-01 82.6% 62.7%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 40.0 3.18e-01 79.7% 35.9%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.55 32.0 3.04e-01 76.8% 48.1%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 37.0 3.02e-01 72.5% 35.5%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.41e-01 84.1% 55.8%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.46e-01 85.5% 51.2%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.25e-01 84.1% 43.6%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.53 36.0 3.23e-01 82.6% 47.2%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 33.0 2.73e-01 73.9% 32.8%
4uapA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 39.0 3.08e-01 85.5% 36.7%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.52 39.0 3.59e-01 84.1% 62.5%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 32.0 3.35e-01 87.0% 68.3%
2wv3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.47e-01 82.6% 59.0%
1g13A00 2.70.220.10 Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator 0.51 40.0 3.06e-01 87.0% 63.0%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.50 36.0 3.54e-01 84.1% 69.2%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 3.28e-01 87.0% 64.3%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.28e-01 81.2% 59.8%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.50 39.0 3.40e-01 87.0% 73.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 43.0 4.04e-01 79.7% 55.3%
3498932 10.32.1.73 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.64 42.0 3.44e-01 79.7% 36.2%
5055064 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 41.0 4.36e-01 79.7% 75.0%
4492672 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 42.0 3.54e-01 82.6% 39.2%
5065792 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 50.0 3.92e-01 88.4% 60.0%
3769452 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 3.81e-01 85.5% 46.1%
3879336 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.62 42.0 3.87e-01 81.2% 54.4%
4941023 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 40.0 3.73e-01 81.2% 55.3%
3931181 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 46.0 4.13e-01 88.4% 73.3%
4559514 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.05e-01 79.7% 71.4%
5015865 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 44.0 3.53e-01 82.6% 55.0%
3535818 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 40.0 3.59e-01 73.9% 63.0%
3603767 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.57 43.0 3.83e-01 85.5% 55.2%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 43.0 4.28e-01 87.0% 98.7%
3183475 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 44.0 3.37e-01 87.0% 66.5%
5065878 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.56 40.0 3.19e-01 75.4% 49.0%
5020151 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.56 39.0 3.24e-01 73.9% 38.5%
3202618 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 40.0 3.37e-01 78.3% 100.0%
4250547 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 43.0 3.41e-01 82.6% 51.4%
3973968 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.56 38.0 2.36e-01 71.0% 92.8%
5003530 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.56 38.0 3.12e-01 72.5% 36.4%
5018298 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.56 43.0 3.79e-01 89.9% 78.3%
5049120 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 39.0 3.08e-01 73.9% 45.6%
5045774 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 39.0 3.14e-01 72.5% 51.4%
3898409 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.55 42.0 3.83e-01 85.5% 74.0%
5059051 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 39.0 3.23e-01 75.4% 37.1%
3636521 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 41.0 3.35e-01 82.6% 97.1%
3551231 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.55 45.0 3.95e-01 91.3% 65.7%
4967732 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 40.0 3.19e-01 75.4% 50.0%
3600913 317.1.1.0 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.55 41.0 3.22e-01 82.6% 37.5%
4029307 10.32.1.180 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEP104_N 0.55 41.0 3.20e-01 79.7% 39.3%
4105434 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 38.0 2.96e-01 71.0% 33.1%
4025085 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 41.0 4.13e-01 89.9% 82.9%
5014950 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.27e-01 84.1% 56.1%
3963369 4222.1.1.2 a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.54 40.0 3.64e-01 79.7% 57.9%
3248573 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 2.79e-01 73.9% 71.1%
5054036 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 43.0 3.07e-01 87.0% 97.6%
3171618 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.54 42.0 3.63e-01 85.5% 53.6%
4121299 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.54 40.0 2.87e-01 84.1% 27.9%
4440530 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 44.0 3.44e-01 89.9% 75.9%
3440667 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.53 39.0 4.04e-01 79.7% 84.6%
3863519 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.53 40.0 3.55e-01 82.6% 62.9%
3791135 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 39.0 3.07e-01 79.7% 41.9%
1031012 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.53 36.0 2.96e-01 73.9% 34.0%
3820626 11.1.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.52 40.0 3.30e-01 84.1% 48.9%
3618294 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.52 41.0 3.56e-01 84.1% 90.5%
3933750 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.36e-01 81.2% 59.1%
4004144 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 39.0 3.48e-01 84.1% 57.1%
5035856 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.52 37.0 3.67e-01 81.2% 73.3%
4938061 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.50e-01 85.5% 54.5%
3440052 11.1.1.887 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMM62 0.52 39.0 3.26e-01 84.1% 48.5%
3945615 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.52 37.0 3.02e-01 79.7% 37.3%
3890782 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.51 39.0 3.12e-01 84.1% 40.0%
3237567 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 36.0 3.90e-01 87.0% 94.5%