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MT375522.1__QLF88101.1__Venkman_gp26__00025

Bact-Vir

MT375522.1__QLF88101.1__Venkman_gp26__00025

Identity

Accession:
MT375522 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methylophilales_phage_Venkman_EXVC282S

TaxID: 2727865

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
Domain cluster: rep: NC_028924.1__YP_009209672.1__AVT43_gp12__00012__D2-81
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.10e-01 80.6% 79.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.48e-01 77.8% 91.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258685 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 37.0 3.18e-01 79.2% 34.8%
3512466 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 37.0 3.11e-01 77.8% 33.6%
3462514 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 37.0 2.82e-01 77.8% 23.9%
3463266 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.61 37.0 3.93e-01 77.8% 71.7%
3520429 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 38.0 2.90e-01 80.6% 25.7%
3931350 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 37.0 2.66e-01 80.6% 20.0%
3927688 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 37.0 2.90e-01 80.6% 27.3%
3672736 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 37.0 2.87e-01 80.6% 25.7%
3420098 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 36.0 2.62e-01 79.2% 20.0%
3928988 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 36.0 2.61e-01 79.2% 19.6%
3926417 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 37.0 2.92e-01 80.6% 28.1%
3926191 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.58 37.0 2.66e-01 80.6% 20.5%
4943240 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.58 49.0 3.57e-01 98.6% 81.4%
4945600 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.55 46.0 3.93e-01 98.6% 72.0%
3175241 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.54 34.0 2.63e-01 79.2% 24.4%
3431417 9.2.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.54 44.0 3.76e-01 98.6% 98.6%
4946412 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 44.0 3.93e-01 100.0% 71.3%
3995422 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.51 38.0 2.67e-01 81.9% 42.0%
None — 0.51 37.0 2.94e-01 80.6% 85.3%
3686573 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.50 41.0 2.60e-01 97.2% 63.8%
4291495 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.50 36.0 2.86e-01 79.2% 83.4%