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MT375523.1__QLF88150.1__Eyrgjafa_gp_4__00004

Bact-Vir

MT375523.1__QLF88150.1__Eyrgjafa_gp_4__00004

Identity

Accession:
MT375523 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Fussvirus› Pelagibacter_phage_Eyrgjafa_EXVC018P

TaxID: 2736227

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-100
PDB
Domain cluster: rep: OR420753.1__WOZ55738.1__HTVC041P_gp4__00004__D1-76
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 38.0 4.52e-01 75.0% 77.3%
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 50.0 3.58e-01 85.0% 75.0%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 54.0 3.62e-01 100.0% 77.5%
5cxwA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 54.0 3.65e-01 98.0% 80.3%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 47.0 3.50e-01 84.0% 77.8%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 46.0 3.49e-01 84.0% 80.6%
1e3uD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 46.0 3.48e-01 84.0% 80.6%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.59 47.0 4.23e-01 85.0% 79.3%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.58 33.0 3.50e-01 88.0% 62.5%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 45.0 3.95e-01 84.0% 80.8%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 50.0 3.48e-01 100.0% 81.4%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 47.0 3.44e-01 89.0% 97.7%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 43.0 4.52e-01 81.0% 96.7%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.56 42.0 4.20e-01 87.0% 78.0%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 48.0 3.38e-01 99.0% 88.2%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 4.08e-01 72.0% 100.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 46.0 3.32e-01 88.0% 94.8%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.71e-01 78.0% 78.3%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.51e-01 78.0% 63.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 37.0 2.66e-01 71.0% 92.1%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.54 35.0 3.29e-01 89.0% 52.3%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.53 38.0 2.50e-01 72.0% 99.2%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 40.0 3.77e-01 79.0% 79.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.53 44.0 3.74e-01 92.0% 61.5%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.56e-01 77.0% 70.5%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.95e-01 94.0% 73.2%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 44.0 3.39e-01 93.0% 68.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 26.0 3.07e-01 76.0% 67.6%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.85e-01 89.0% 52.3%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.58e-01 78.0% 99.2%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.51 40.0 3.21e-01 85.0% 60.0%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.33e-01 73.0% 100.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 41.0 3.15e-01 88.0% 96.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3672678 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.64 42.0 4.56e-01 89.0% 80.0%
4248896 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 26.0 3.16e-01 86.0% 56.9%
5073565 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 4.79e-01 78.0% 100.0%
3603559 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 46.0 4.52e-01 81.0% 83.6%
3291097 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.60 41.0 3.79e-01 71.0% 80.8%
3593007 331.10.1.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase 0.60 47.0 3.32e-01 83.0% 70.8%
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 4.57e-01 73.0% 100.0%
3289282 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.60 47.0 3.27e-01 85.0% 58.5%
7054 881.2.1.1 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.59 47.0 4.32e-01 85.0% 84.3%
4992460 222.1.1.43 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF2103 0.58 39.0 4.10e-01 83.0% 77.3%
5018021 223.1.1.54 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 0.58 47.0 3.54e-01 86.0% 46.8%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.58 45.0 4.77e-01 82.0% 98.9%
5053281 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 4.22e-01 82.0% 75.2%
3244738 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.58 44.0 4.56e-01 80.0% 97.9%
5049690 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 4.01e-01 82.0% 69.3%
3414531 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 47.0 4.81e-01 85.0% 100.0%
4027075 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.58 42.0 4.33e-01 83.0% 80.0%
1823111 304.126.1.4 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.58 38.0 4.01e-01 88.0% 73.9%
4028315 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 43.0 4.23e-01 79.0% 88.2%
3623755 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.58 45.0 4.35e-01 83.0% 81.7%
3707456 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.57 43.0 3.72e-01 79.0% 81.9%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 43.0 4.09e-01 79.0% 73.9%
3492395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 4.41e-01 77.0% 100.0%
3633647 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 26.0 3.19e-01 74.0% 67.7%
3365621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 4.03e-01 84.0% 88.8%
2817021 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 42.0 3.90e-01 79.0% 75.8%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.43e-01 82.0% 45.9%
3507450 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 41.0 3.77e-01 76.0% 72.0%
2042120 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.55 42.0 3.93e-01 79.0% 81.5%
4024042 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.55 45.0 3.68e-01 89.0% 75.1%
3808166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 4.02e-01 94.0% 82.2%
5065641 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.27e-01 73.0% 58.0%
3681071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.84e-01 84.0% 91.5%
4960887 814.1.1.0 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.52 37.0 3.58e-01 74.0% 79.1%
3959753 3513.1.1.0 ↗ a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.52 45.0 4.00e-01 96.0% 89.7%
3719440 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.52 35.0 3.28e-01 93.0% 55.2%
4967348 814.1.1.0 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.52 36.0 3.44e-01 71.0% 81.6%
3664116 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.51 39.0 2.61e-01 82.0% 22.7%
1199755 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.51 38.0 2.81e-01 78.0% 74.0%
4986587 814.1.1.0 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.51 36.0 3.45e-01 74.0% 80.0%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 32.0 3.18e-01 85.0% 58.2%
3602276 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.50 46.0 4.12e-01 100.0% 87.4%
4024044 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 39.0 3.86e-01 83.0% 88.9%