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MT375524.1QLF88228.1Gjalp_gp36__00035

Bact-Vir

MT375524.1__QLF88228.1__Gjalp_gp36__00035

Identity

Accession:: MT375524 ↗
Kingdom:: phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Fussvirus› Pelagibacter_phage_Gjalp_EXVC020P

TaxID: 2736228

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 195-298

PDB

Domain cluster: representative

CATH (32)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.63	43.0	4.18e-01	70.2%	84.6%
3zciA00	1.20.58.1660	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	43.0	3.57e-01	70.2%	66.0%
3vwaA03	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.62	51.0	3.68e-01	98.1%	30.9%
2ggfA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	55.0	5.05e-01	99.0%	92.0%
3ha4B00	1.20.58.690	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	46.0	4.41e-01	100.0%	69.2%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.61	43.0	3.90e-01	74.0%	81.6%
3fnbA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.60	46.0	4.47e-01	79.8%	83.3%
3k9iA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.60	38.0	3.91e-01	95.2%	65.0%
3f1bA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	48.0	3.97e-01	85.6%	57.9%
3fp3A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	43.0	3.98e-01	99.0%	59.3%
3w3uA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	52.0	2.99e-01	98.1%	19.2%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.57	44.0	4.71e-01	80.8%	96.6%
3zlaA02	1.10.472.180	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain	0.57	37.0	3.80e-01	89.4%	67.6%
2oerA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	44.0	3.73e-01	86.5%	59.8%
4q5nA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	43.0	4.21e-01	83.7%	85.7%
1v9mA01	1.10.132.50	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › ATP synthase (C/AC39) subunit, domain 3	0.55	38.0	3.74e-01	72.1%	87.0%
1sxjE03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.54	45.0	4.71e-01	93.3%	96.9%
3sl9B00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.54	45.0	3.87e-01	98.1%	57.6%
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.53	42.0	4.43e-01	87.5%	100.0%
6hftA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	40.0	3.78e-01	99.0%	65.4%
5afdA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.53	46.0	3.30e-01	95.2%	51.7%
7qihA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	37.0	3.76e-01	90.4%	74.3%
1tqgA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.53	36.0	3.62e-01	76.0%	68.6%
1y4cA03	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.52	39.0	3.79e-01	79.8%	69.9%
5xdcB01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.52	41.0	4.10e-01	88.5%	85.6%
8jpdG01	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.51	37.0	3.40e-01	96.2%	54.5%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	45.0	3.99e-01	100.0%	66.5%
1wp9B03	1.20.1320.20	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain	0.51	41.0	3.93e-01	100.0%	73.1%
5h5mA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	39.0	3.63e-01	79.8%	67.7%
3tjzB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.51	44.0	3.32e-01	98.1%	43.9%
2fbnA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	45.0	3.96e-01	99.0%	81.7%
3qwwA03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	40.0	3.37e-01	98.1%	48.2%

ECOD (36)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5004518	4995.1.1.1 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2	0.67	45.0	5.16e-01	75.0%	97.3%
4999823	4995.1.1.1 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2	0.66	47.0	5.22e-01	75.0%	96.2%
4544657	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	57.0	4.94e-01	100.0%	64.1%
3714806	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.63	57.0	4.15e-01	100.0%	93.2%
3271506	109.4.1.170 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N	0.62	55.0	3.40e-01	99.0%	17.0%
3596372	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	49.0	5.06e-01	92.3%	93.7%
3913315	109.4.1.749 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KAP	0.61	46.0	3.24e-01	98.1%	25.2%
3959976	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.61	48.0	4.33e-01	85.6%	70.7%
3481090	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	53.0	3.30e-01	100.0%	23.0%
4657744	109.4.1.182 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB	0.60	52.0	3.88e-01	98.1%	59.0%
3721580	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.60	53.0	3.94e-01	99.0%	96.5%
3649823	601.1.1.38 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › mTOR_dom	0.60	45.0	3.76e-01	94.2%	44.3%
3876902	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	53.0	4.24e-01	100.0%	51.2%
3725527	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.60	54.0	4.76e-01	99.0%	82.0%
3716333	603.1.1.1 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin	0.58	51.0	4.02e-01	96.2%	88.4%
5020418	601.3.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt	0.58	37.0	3.37e-01	83.7%	47.1%
3413715	109.4.1.182 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB	0.57	49.0	3.31e-01	100.0%	35.5%
3756535	604.1.1.5 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3	0.56	39.0	3.82e-01	73.1%	87.0%
3616727	603.1.1.98 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2	0.56	48.0	3.86e-01	96.2%	81.9%
3938862	604.1.1.98 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1	0.55	38.0	3.80e-01	70.2%	87.3%
3274169	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.55	49.0	3.17e-01	100.0%	29.8%
3272618	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.55	39.0	3.44e-01	75.0%	52.3%
3973819	191.1.1.21 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_18	0.54	42.0	3.87e-01	85.6%	73.8%
3695454	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	48.0	4.73e-01	99.0%	93.6%
4060037	109.4.1.264 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3	0.54	43.0	3.18e-01	97.1%	32.4%
3401149	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	48.0	3.84e-01	100.0%	68.3%
4528537	109.4.1.146 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load	0.53	43.0	4.17e-01	99.0%	80.0%
3731571	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	46.0	3.87e-01	100.0%	62.7%
4962299	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	45.0	3.97e-01	97.1%	80.6%
5028308	109.4.1.207 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2	0.51	46.0	3.72e-01	99.0%	87.2%
3832604	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.51	41.0	2.61e-01	100.0%	14.8%
3318788	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	44.0	3.86e-01	98.1%	69.1%
3713159	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	37.0	3.55e-01	76.0%	86.7%
3484674	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	40.0	3.54e-01	90.4%	55.8%
4927006	601.3.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt	0.50	35.0	3.40e-01	70.2%	68.7%
4025698	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	44.0	3.69e-01	100.0%	57.9%

D2 high residues 559-612

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fwdA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.61	39.0	3.46e-01	85.2%	46.2%
2g6zA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.59	37.0	2.76e-01	96.3%	23.1%
6hqvA05	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.58	48.0	3.41e-01	94.4%	93.8%
3lufB01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.57	41.0	3.30e-01	79.6%	60.0%
2wxwA02	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.57	43.0	3.06e-01	90.7%	30.4%
3jveA00	3.40.50.10190	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain	0.57	39.0	3.42e-01	75.9%	83.2%
6ia6A01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.57	47.0	3.02e-01	92.6%	39.6%
2hcmA01	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.56	43.0	3.27e-01	88.9%	97.3%
4kx7A02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.55	44.0	2.87e-01	100.0%	19.7%
6zpkA01	3.40.50.10190	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain	0.54	37.0	3.28e-01	70.4%	87.2%
2r7aB01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.52	37.0	3.02e-01	81.5%	79.5%
3l6eA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.50	44.0	2.99e-01	100.0%	27.6%
4j7hA02	3.90.79.40	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit	0.50	43.0	3.09e-01	96.3%	81.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5002768	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.71	42.0	3.46e-01	90.7%	33.7%
3578596	7559.1.1.1 ↗	a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4	0.68	56.0	4.00e-01	90.7%	68.1%
4125936	2003.1.1.25 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C	0.61	49.0	3.45e-01	88.9%	88.4%
4943477	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.56	45.0	3.16e-01	100.0%	80.5%
3842539	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.54	44.0	3.53e-01	87.0%	91.0%
3915773	148.1.3.19 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3	0.53	42.0	3.41e-01	85.2%	90.0%
4989442	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.52	42.0	3.01e-01	94.4%	39.1%
4951884	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.52	43.0	3.04e-01	94.4%	41.6%
3649854	7512.1.1.1 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT	0.51	36.0	2.39e-01	72.2%	82.3%
None	—		0.51	42.0	2.63e-01	90.7%	51.8%
3466141	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.51	36.0	2.74e-01	81.5%	52.4%
5004503	378.1.1.20 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524	0.51	42.0	3.17e-01	92.6%	100.0%
5049500	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.51	38.0	2.88e-01	85.2%	66.7%
3277661	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.51	43.0	3.41e-01	92.6%	64.8%

D3 medium residues 70-132

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yevC00	6.10.280.110	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.75	46.0	4.66e-01	79.4%	61.9%
1ij5A01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	45.0	4.28e-01	95.2%	67.1%
4cb8A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	48.0	2.89e-01	95.2%	20.9%
1wleA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.58	51.0	4.12e-01	95.2%	56.1%
2lahA00	1.25.40.430	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	41.0	3.23e-01	81.0%	68.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3855578	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	46.0	3.09e-01	98.4%	74.2%

D4 medium residues 133-192

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2og9A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.68	46.0	3.68e-01	83.3%	33.1%
4oxwA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.56	45.0	3.73e-01	88.3%	51.9%