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MT375528.1__QLF88439.1__Jormungand_gp44__00044

Bact-Vir

MT375528.1__QLF88439.1__Jormungand_gp44__00044

Identity

Accession:
MT375528 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07275.17 best ArdA 70.8 2.70e-19 98.8% 52.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.62 45.0 3.55e-01 77.1% 59.6%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 38.0 4.13e-01 71.1% 88.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3413958 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.59 48.0 4.77e-01 97.6% 89.4%
4378815 302.2.1.1 a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small 0.55 39.0 3.81e-01 75.9% 67.4%
4927145 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 35.0 3.05e-01 74.7% 56.6%
D2 high residues 148-213
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07275.17 best ArdA 32.1 2.20e-07 90.9% 31.6%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w82A03 1.10.10.1190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 0.76 62.0 6.38e-01 90.9% 98.4%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.64 56.0 4.72e-01 100.0% 80.9%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.11e-01 93.9% 63.8%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.49e-01 93.9% 66.3%
2fmlB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.77e-01 93.9% 89.1%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.58 36.0 3.08e-01 98.5% 37.0%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 31.0 2.70e-01 95.5% 30.8%
3ragB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.58 47.0 3.34e-01 93.9% 98.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 4.20e-01 93.9% 79.7%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.96e-01 92.4% 70.7%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.62e-01 93.9% 58.5%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 43.0 2.99e-01 86.4% 80.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.37e-01 93.9% 46.5%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.70e-01 93.9% 53.3%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.55 42.0 4.04e-01 93.9% 71.2%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.98e-01 93.9% 67.9%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.55e-01 90.9% 59.7%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 42.0 4.04e-01 93.9% 73.1%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.03e-01 98.5% 72.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.91e-01 97.0% 70.4%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.08e-01 92.4% 40.2%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.63e-01 93.9% 59.8%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 44.0 3.02e-01 97.0% 59.4%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 2.91e-01 89.4% 36.6%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 32.0 3.06e-01 95.5% 53.2%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 44.0 3.29e-01 100.0% 77.4%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.63e-01 95.5% 72.0%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.77e-01 95.5% 73.8%
4q48A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.16e-01 93.9% 52.9%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.75e-01 93.9% 79.7%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.51 41.0 3.58e-01 97.0% 56.5%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.52e-01 89.4% 73.8%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.78e-01 93.9% 74.7%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 32.0 3.20e-01 95.5% 61.8%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.50 38.0 2.54e-01 84.8% 83.3%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.50 29.0 2.85e-01 93.9% 47.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942694 3489.1.1.1 a+b complex topology › ArdA › ArdA › ArdA › ArdA 0.83 73.0 5.32e-01 100.0% 38.0%
184960 3489.1.1.1 a+b complex topology › ArdA › ArdA › ArdA › ArdA 0.74 65.0 4.91e-01 100.0% 40.5%
3824278 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.64 43.0 4.06e-01 97.0% 55.3%
4991630 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 5.25e-01 90.9% 96.7%
3390901 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 45.0 3.25e-01 77.3% 28.3%
2646 101.1.2.35 alpha arrays › HTH › HTH › winged helix domain › TFIIF_beta 0.63 41.0 4.07e-01 93.9% 63.8%
3174480 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.63 52.0 4.47e-01 95.5% 60.0%
3877696 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.62 41.0 3.62e-01 98.5% 45.0%
3585707 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.62 47.0 3.30e-01 84.8% 57.1%
3922338 101.1.2.512 alpha arrays › HTH › HTH › winged helix domain › PF25877 0.62 47.0 4.48e-01 98.5% 70.0%
1910394 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.62 40.0 4.12e-01 98.5% 69.2%
3175904 101.1.2.113 alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.61 44.0 3.47e-01 92.4% 34.0%
3916427 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 52.0 4.13e-01 95.5% 63.7%
3420624 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 48.0 4.16e-01 95.5% 56.2%
3825121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 39.0 3.71e-01 95.5% 56.2%
3483771 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.58 48.0 4.34e-01 95.5% 68.4%
4013928 2003.1.5.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.58 50.0 3.34e-01 100.0% 84.6%
4992272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.97e-01 93.9% 55.8%
4255240 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.58e-01 93.9% 80.0%
3205132 101.1.2.533 alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.57 45.0 4.07e-01 95.5% 61.1%
3654930 101.1.2.83 alpha arrays › HTH › HTH › winged helix domain › SKA1 0.57 40.0 3.24e-01 97.0% 38.3%
3666925 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 45.0 3.76e-01 95.5% 48.0%
4170959 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 36.0 3.76e-01 93.9% 70.0%
4024318 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.30e-01 93.9% 72.9%
3607649 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 36.0 3.75e-01 95.5% 70.0%
1142249 101.1.2.83 alpha arrays › HTH › HTH › winged helix domain › SKA1 0.56 39.0 3.30e-01 97.0% 41.2%
3362715 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 44.0 4.11e-01 100.0% 69.4%
3481408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.20e-01 95.5% 29.7%
3178207 101.1.2.774 alpha arrays › HTH › HTH › winged helix domain › PF30201 0.56 41.0 3.10e-01 93.9% 30.3%
3166551 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.56 43.0 3.63e-01 100.0% 47.5%
4167932 101.1.2.177 alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS 0.55 44.0 4.13e-01 93.9% 70.6%
5048954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.61e-01 95.5% 49.6%
3710687 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 35.0 3.43e-01 95.5% 57.3%
3821340 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.55 42.0 3.38e-01 93.9% 39.3%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 43.0 3.26e-01 92.4% 33.3%
3519165 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.01e-01 93.9% 69.4%
3268785 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.53e-01 97.0% 46.4%
3206206 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 38.0 3.71e-01 100.0% 65.3%
4953964 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 44.0 3.82e-01 93.9% 59.1%
3242475 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.55 42.0 3.91e-01 93.9% 64.4%
3284376 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.54 36.0 3.63e-01 93.9% 69.2%
3817137 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.54 43.0 3.84e-01 95.5% 60.0%
4000249 101.1.2.570 alpha arrays › HTH › HTH › winged helix domain › DUF7517 0.54 42.0 3.99e-01 95.5% 70.6%
2697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.89e-01 93.9% 71.4%
3413705 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.53 40.0 3.71e-01 95.5% 62.2%
3489177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.15e-01 95.5% 80.0%
4855119 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.53 38.0 3.43e-01 95.5% 53.1%
3685642 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 37.0 3.52e-01 100.0% 61.3%
4304578 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.87e-01 93.9% 74.7%
3508627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.57e-01 92.4% 68.6%
3818462 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.52 41.0 3.73e-01 93.9% 64.4%
3315163 3125.1.1.1 alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.51 37.0 3.57e-01 77.3% 96.0%
3936962 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.51 40.0 3.33e-01 95.5% 46.4%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.65e-01 98.5% 64.4%
4940103 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.39e-01 90.9% 65.7%
3179915 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.51 40.0 3.27e-01 95.5% 44.6%
3925904 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.51 39.0 3.01e-01 95.5% 33.7%
3447913 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 40.0 3.54e-01 93.9% 58.2%
4467398 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.50 34.0 3.36e-01 93.9% 65.7%
3236950 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.50 33.0 3.28e-01 90.9% 64.3%
2326871 101.1.2.500 alpha arrays › HTH › HTH › winged helix domain › PF30898 0.50 40.0 3.38e-01 90.9% 99.2%