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MT408532.1__QJT70027.1__SynMITS9220M01_011__00011
Bact-VirMT408532.1__QJT70027.1__SynMITS9220M01_011__00011
Identity
- Accession:
- MT408532 ↗
- Kingdom:
- phage
Quality
60.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_SynMITS9220M01
TaxID: 2736186
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-64
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a52A02 | 1.10.60.40 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.76 | 67.0 | 5.57e-01 | 98.0% | 63.5% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 46.0 | 4.06e-01 | 92.0% | 56.6% |
| 7wf6A01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.60 | 48.0 | 3.69e-01 | 100.0% | 37.4% |
| 2a6tB01 | 1.10.10.1050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dcp2, box A domain | 0.59 | 35.0 | 3.87e-01 | 80.0% | 73.8% |
| 4bg5B00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.58 | 49.0 | 3.37e-01 | 100.0% | 71.9% |
| 1rsoB00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.55 | 38.0 | 3.75e-01 | 76.0% | 78.6% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 43.0 | 3.99e-01 | 98.0% | 78.7% |
| 3ka7A02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.52 | 40.0 | 2.68e-01 | 84.0% | 21.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033284 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.75 | 61.0 | 3.69e-01 | 90.0% | 14.8% |
| 3170621 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.73 | 51.0 | 4.09e-01 | 76.0% | 39.0% |
| 4268595 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.71 | 57.0 | 3.52e-01 | 90.0% | 14.8% |
| 5070817 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.67 | 58.0 | 3.57e-01 | 98.0% | 79.9% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.65 | 46.0 | 3.73e-01 | 78.0% | 39.0% |
| 3588718 | 633.19.1.0 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain | 0.64 | 56.0 | 4.93e-01 | 100.0% | 88.0% |
| 4998773 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.62 | 45.0 | 3.07e-01 | 80.0% | 20.5% |
| 4669682 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.61 | 51.0 | 3.10e-01 | 100.0% | 14.6% |
| 3932729 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.61 | 45.0 | 3.41e-01 | 82.0% | 48.8% |
| 4539964 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.60 | 42.0 | 2.42e-01 | 76.0% | 7.4% |
| 4814019 | 148.1.3.2 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC3_N | 0.59 | 49.0 | 3.28e-01 | 100.0% | 85.8% |
| 3593261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.70e-01 | 72.0% | 60.0% |
| 3204342 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.58 | 44.0 | 4.28e-01 | 100.0% | 74.5% |
| 4237633 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.57 | 46.0 | 2.89e-01 | 100.0% | 39.5% |
| 5046452 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 45.0 | 3.55e-01 | 100.0% | 63.8% |
| 4952141 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.56 | 42.0 | 3.72e-01 | 86.0% | 62.5% |
| 4874125 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.56 | 39.0 | 2.97e-01 | 78.0% | 74.1% |
| 4963961 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.53 | 38.0 | 2.66e-01 | 76.0% | 79.5% |
| 4530564 | 3754.1.1.2 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1 | 0.53 | 44.0 | 2.74e-01 | 100.0% | 81.2% |
| 4599937 | 3754.1.1.0 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related | 0.53 | 45.0 | 2.81e-01 | 100.0% | 20.7% |
| 4289604 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.51 | 40.0 | 2.55e-01 | 100.0% | 21.5% |
| 3687437 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.50 | 34.0 | 2.67e-01 | 72.0% | 30.0% |
D2
high
residues 325-383
D3
high
residues 422-559
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07486.18 best | Hydrolase_2 | 34.8 | 3.30e-08 | 77.5% | 57.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dn7A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 32.0 | 2.69e-01 | 77.5% | 33.8% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 26.0 | 3.00e-01 | 88.4% | 63.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185732 | 3374.1.1.2 ↗ | a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › Hydrolase_2 | 0.76 | 62.0 | 6.41e-01 | 84.8% | 90.6% |
| 4987623 | 3374.1.1.0 ↗ | a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain | 0.69 | 60.0 | 5.36e-01 | 92.8% | 85.9% |
| 4944836 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 30.0 | 3.96e-01 | 86.2% | 98.5% |