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MT408532.1__QJT70032.1__SynMITS9220M01_016__00016

Bact-Vir

MT408532.1__QJT70032.1__SynMITS9220M01_016__00016

Identity

Accession:
MT408532 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_SynMITS9220M01

TaxID: 2736186

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-68
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 51.0 4.03e-01 78.7% 73.2%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.69 56.0 5.49e-01 91.8% 94.0%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.65 55.0 4.33e-01 100.0% 93.6%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 49.0 3.06e-01 90.2% 88.5%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.61 45.0 3.87e-01 83.6% 63.6%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 44.0 3.04e-01 78.7% 41.9%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 45.0 2.79e-01 85.2% 28.3%
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.59 46.0 3.14e-01 88.5% 95.7%
4v19J00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.59 45.0 3.47e-01 90.2% 60.7%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.59 43.0 2.75e-01 83.6% 63.5%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 44.0 3.96e-01 83.6% 87.5%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.58 48.0 3.12e-01 98.4% 80.9%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.91e-01 90.2% 41.2%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 42.0 2.81e-01 82.0% 70.9%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 33.0 3.86e-01 88.5% 89.7%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.56 36.0 3.74e-01 98.4% 74.1%
1k32A04 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 43.0 3.83e-01 88.5% 89.5%
3hkmB00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 40.0 2.84e-01 80.3% 35.7%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 4.24e-01 100.0% 81.9%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.56e-01 96.7% 47.2%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 2.63e-01 72.1% 97.0%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.86e-01 100.0% 91.5%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 4.09e-01 98.4% 81.9%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.53 38.0 2.86e-01 82.0% 97.9%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.53 44.0 3.23e-01 100.0% 83.6%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 42.0 3.41e-01 91.8% 96.2%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.53 40.0 2.82e-01 83.6% 96.3%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.52 39.0 3.09e-01 88.5% 77.6%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.53e-01 88.5% 91.2%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 40.0 2.85e-01 90.2% 95.8%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.51 40.0 4.02e-01 88.5% 95.3%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 2.73e-01 93.4% 29.5%
4i8iA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 39.0 2.73e-01 91.8% 32.0%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 40.0 3.79e-01 96.7% 82.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3323055 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.73 65.0 6.43e-01 100.0% 100.0%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 53.0 4.66e-01 96.7% 53.3%
1889033 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.67 39.0 2.52e-01 90.2% 13.6%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.63 49.0 3.91e-01 96.7% 41.9%
4988225 4187.1.1.2 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.61 50.0 4.08e-01 95.1% 59.2%
4980673 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 49.0 4.11e-01 91.8% 83.6%
4061222 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 46.0 2.57e-01 85.2% 14.1%
4488950 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 45.0 2.55e-01 85.2% 13.4%
None — 0.60 45.0 2.55e-01 85.2% 14.2%
3688269 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.59 45.0 2.67e-01 85.2% 22.9%
2388378 12.3.1.12 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 0.58 48.0 3.18e-01 98.4% 85.6%
4178839 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.58 44.0 2.64e-01 85.2% 23.1%
4958385 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 34.0 3.99e-01 90.2% 87.5%
5060170 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.57 43.0 2.80e-01 85.2% 21.9%
4189267 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.57 31.0 3.20e-01 78.7% 55.0%
4972761 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.78e-01 78.7% 76.1%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.56 43.0 3.00e-01 93.4% 23.9%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 33.0 3.44e-01 91.8% 63.6%
3213269 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.55 43.0 2.88e-01 91.8% 81.0%
5008694 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.55 38.0 2.84e-01 77.0% 80.0%
3803377 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.54 41.0 3.29e-01 83.6% 71.5%
3575279 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 43.0 4.08e-01 100.0% 88.7%
3256223 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.72e-01 88.5% 88.9%
4969778 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 40.0 2.72e-01 88.5% 45.9%
3346946 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.53 39.0 3.14e-01 77.0% 65.5%
3565026 221.1.1.175 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_RHG40_C 0.52 42.0 3.68e-01 98.4% 73.3%
3645831 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.52 39.0 3.08e-01 88.5% 81.3%
3227575 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.51 43.0 3.07e-01 98.4% 99.5%
3249313 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.51 40.0 3.12e-01 90.2% 72.7%
3500548 375.5.1.1 ↗ few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.51 35.0 3.59e-01 73.8% 83.3%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.51 38.0 3.05e-01 88.5% 78.7%
4161761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 2.92e-01 70.5% 100.0%
3808127 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.50 38.0 3.09e-01 88.5% 81.5%
D2 high residues 85-171
PDB
Domain cluster: rep: KJ019128.1__AIX38078.1__Syn7803US88_77__00077__D502-594
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ekjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.30e-01 83.9% 85.7%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 3.26e-01 81.6% 74.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 33.0 3.18e-01 88.5% 52.0%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 4.11e-01 89.7% 98.0%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.37e-01 77.0% 79.3%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 35.0 2.86e-01 73.6% 85.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265771 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.43e-01 78.2% 95.7%
3914707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.68e-01 90.8% 60.6%
2795822 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.53 39.0 2.98e-01 80.5% 69.2%
5060839 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.10e-01 87.4% 96.8%
4027927 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.51 42.0 4.12e-01 94.3% 87.4%
D3 high residues 175-264
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 3.40e-01 85.6% 25.2%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 4.09e-01 72.2% 86.4%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 49.0 4.29e-01 87.8% 61.3%
1rhfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.84e-01 87.8% 92.3%
2uy6C01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.59 41.0 3.61e-01 73.3% 85.2%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 4.20e-01 80.0% 68.9%
1h6fA00 2.60.40.820 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription factor, T-box 0.58 46.0 3.71e-01 86.7% 75.5%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.58 47.0 4.12e-01 90.0% 68.1%
6vfqA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 47.0 4.39e-01 91.1% 89.5%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.58 44.0 4.30e-01 83.3% 87.9%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.36e-01 86.7% 80.4%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 43.0 4.31e-01 85.6% 80.0%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.41e-01 86.7% 84.9%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.19e-01 83.3% 87.8%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.56 43.0 3.81e-01 86.7% 76.2%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 43.0 4.28e-01 86.7% 80.6%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 36.0 3.68e-01 72.2% 67.4%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 36.0 4.04e-01 71.1% 96.8%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.45e-01 92.2% 92.7%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 45.0 4.51e-01 95.6% 98.9%
4o65A00 2.60.120.570 Mainly Beta › Sandwich › Jelly Rolls › Particulate methane monooxygenase, b subunit. Chain: A, domain 1 0.54 47.0 4.04e-01 100.0% 80.4%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.97e-01 84.4% 96.3%
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.54 37.0 3.24e-01 73.3% 54.2%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.50e-01 85.6% 88.4%
5zi7A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.53 39.0 4.00e-01 80.0% 86.2%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.53 44.0 4.36e-01 95.6% 100.0%
1w3fA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.52 42.0 3.57e-01 92.2% 83.6%
4fxtA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.88e-01 87.8% 90.7%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.51 39.0 3.60e-01 83.3% 75.2%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.49e-01 88.9% 73.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1723245 10.42.1.2 ↗ beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain › Coat_P 0.65 48.0 4.47e-01 86.7% 60.7%
4970326 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 44.0 4.37e-01 72.2% 73.7%
3263511 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.53e-01 88.9% 70.0%
5002657 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.63 43.0 4.47e-01 72.2% 76.5%
3250793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.57e-01 88.9% 74.7%
3537039 11.1.1.906 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26015 0.60 48.0 4.81e-01 86.7% 96.7%
3027089 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 4.47e-01 83.3% 80.5%
3619679 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 4.56e-01 85.6% 87.0%
3878868 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.60 47.0 3.85e-01 87.8% 52.2%
3412756 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 4.42e-01 85.6% 88.6%
5041245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.98e-01 72.2% 85.0%
4970419 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 45.0 3.48e-01 84.4% 60.9%
3452425 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.58 40.0 3.96e-01 73.3% 77.0%
3256286 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.58 40.0 3.35e-01 73.3% 46.6%
27204 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.58 40.0 3.57e-01 72.2% 61.9%
4459294 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.58 43.0 3.34e-01 91.1% 33.6%
3966451 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 44.0 4.38e-01 84.4% 97.9%
2791089 11.1.1.43 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Flavi_glycop_C 0.57 45.0 4.35e-01 90.0% 73.8%
3590216 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.57 40.0 3.41e-01 72.2% 60.0%
3550064 11.1.1.604 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_6th 0.57 44.0 4.27e-01 85.6% 88.6%
3869344 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 44.0 4.08e-01 90.0% 64.2%
3919434 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.87e-01 91.1% 52.1%
4147159 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.57 39.0 3.59e-01 72.2% 66.4%
3534909 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.57 47.0 4.26e-01 93.3% 68.8%
3302752 11.1.1.1011 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_GP210_16th 0.57 44.0 4.34e-01 85.6% 82.1%
4876557 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.57 39.0 3.46e-01 72.2% 59.3%
5010197 11.1.1.1438 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28525 0.57 42.0 4.17e-01 85.6% 75.8%
3559589 11.1.1.591 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig7 0.56 44.0 4.14e-01 85.6% 84.5%
153388 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.56 42.0 4.19e-01 83.3% 81.6%
1759165 11.1.1.250 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_10 0.56 43.0 4.04e-01 85.6% 80.5%
3271205 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.24e-01 85.6% 81.0%
3896291 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.55 42.0 4.15e-01 83.3% 82.1%
4932993 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.19e-01 85.6% 98.9%
3595702 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.54 41.0 3.84e-01 97.8% 63.3%
3580730 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 44.0 3.68e-01 92.2% 61.8%
3869057 11.1.1.527 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig1 0.54 42.0 4.18e-01 87.8% 87.4%
3818518 11.1.1.527 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig1 0.54 42.0 4.18e-01 87.8% 86.3%
3527770 11.1.1.1044 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ADGRF3 0.53 42.0 4.17e-01 87.8% 85.3%
4327422 12.1.1.31 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_59M 0.53 37.0 3.25e-01 74.4% 79.3%
4000176 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.52 40.0 3.88e-01 85.6% 100.0%
3574292 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 43.0 4.19e-01 96.7% 86.7%
D4 medium residues 279-314
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.58 41.0 3.12e-01 75.0% 55.8%
1o12A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 43.0 2.59e-01 83.3% 58.3%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.45e-01 91.7% 59.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.72e-01 94.4% 72.3%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 39.0 3.53e-01 77.8% 89.1%
5z9tA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 38.0 2.17e-01 75.0% 21.3%
7op3A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 38.0 2.58e-01 88.9% 94.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.42e-01 94.4% 73.9%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.51 35.0 2.62e-01 75.0% 80.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.50 41.0 2.97e-01 100.0% 79.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739257 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 57.0 5.75e-01 91.7% 100.0%
4321324 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 54.0 4.65e-01 91.7% 98.5%
4028977 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.67e-01 91.7% 30.4%
3412565 109.59.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Vps16_N 0.58 41.0 2.80e-01 77.8% 55.0%
3822266 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.56 40.0 4.10e-01 91.7% 88.9%
None — 0.54 40.0 2.44e-01 94.4% 13.4%
5001818 223.8.1.5 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › DUF7288 0.54 39.0 2.75e-01 91.7% 20.0%
5053796 2003.1.5.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.53 40.0 2.33e-01 83.3% 21.6%