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MT408532.1__QJT70033.1__SynMITS9220M01_017__00017

Bact-Vir

MT408532.1__QJT70033.1__SynMITS9220M01_017__00017

Identity

Accession:
MT408532 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_SynMITS9220M01

TaxID: 2736186

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-60
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.12e-01 98.0% 82.5%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 47.0 3.73e-01 100.0% 38.3%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 49.0 3.51e-01 92.2% 29.4%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.59 49.0 3.49e-01 96.1% 43.2%
3uueA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 44.0 2.84e-01 88.2% 15.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.42e-01 96.1% 75.8%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 45.0 2.82e-01 98.0% 27.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.23e-01 82.4% 81.1%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 2.96e-01 100.0% 42.9%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.55 45.0 2.81e-01 100.0% 23.6%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.84e-01 100.0% 40.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 2.94e-01 82.4% 31.1%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 2.77e-01 100.0% 49.2%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 2.92e-01 86.3% 34.5%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 2.70e-01 88.2% 65.4%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.10e-01 82.4% 66.3%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.83e-01 82.4% 41.3%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.50 37.0 2.89e-01 82.4% 34.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 43.0 3.34e-01 100.0% 80.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 2.58e-01 90.2% 84.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939489 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.77 62.0 4.18e-01 90.2% 89.2%
5025209 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.75 60.0 3.91e-01 90.2% 92.8%
5000652 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.71 58.0 3.93e-01 90.2% 96.7%
3660563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.59e-01 96.1% 58.5%
3751502 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.67 54.0 4.91e-01 98.0% 67.1%
3966231 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.63 52.0 4.21e-01 100.0% 68.2%
4846311 1075.1.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG 0.62 51.0 4.71e-01 100.0% 88.7%
3404395 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.56 45.0 2.77e-01 100.0% 59.0%
3431035 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.55 45.0 2.85e-01 100.0% 35.2%
3364517 5.1.5.190 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Str_synth, SGL, SSL_N 0.55 45.0 2.79e-01 100.0% 38.2%
4012764 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.55 39.0 3.86e-01 94.1% 70.9%
3520092 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 41.0 3.64e-01 84.3% 56.2%
3445280 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.54 43.0 2.69e-01 100.0% 24.2%
3390503 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 41.0 3.84e-01 84.3% 69.2%
3894657 5.1.3.266 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_HCF, Kelch_KLHDC2_KLHL20_DRC7 0.54 40.0 2.42e-01 78.4% 14.2%
3907514 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 43.0 2.87e-01 100.0% 50.2%
3739739 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.54 44.0 2.76e-01 100.0% 39.4%
3290377 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.53 43.0 2.85e-01 100.0% 42.2%
3328075 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 38.0 2.33e-01 78.4% 12.7%
3738401 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 39.0 2.98e-01 82.4% 45.6%
5012319 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.51 38.0 3.30e-01 86.3% 49.4%
3935325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.40e-01 86.3% 13.5%
3211944 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.51 38.0 2.46e-01 92.2% 46.9%
3621871 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.50 41.0 3.18e-01 100.0% 74.8%