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MT408532.1__QJT70053.1__SynMITS9220M01_040__00037

Bact-Vir

MT408532.1__QJT70053.1__SynMITS9220M01_040__00037

Identity

Accession:
MT408532 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_SynMITS9220M01

TaxID: 2736186

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-65
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 43.0 3.06e-01 100.0% 27.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 2.91e-01 70.8% 45.8%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 37.0 3.21e-01 86.2% 45.4%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.55 36.0 2.72e-01 78.5% 28.5%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.54 42.0 3.11e-01 83.1% 92.9%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.51 36.0 2.71e-01 78.5% 29.2%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 2.89e-01 76.9% 64.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 49.0 4.02e-01 73.8% 47.8%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 45.0 4.00e-01 80.0% 51.1%
3488181 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 49.0 3.97e-01 83.1% 44.8%
2823068 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.62 36.0 2.63e-01 87.7% 22.2%
5052968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.61 45.0 2.92e-01 84.6% 15.4%
4888128 3847.1.1.1 ↗ alpha bundles › Hemagglutinin HA2 chain › Hemagglutinin HA2 chain › Hemagglutinin HA2 chain › Hemagglutinin 0.59 41.0 3.20e-01 72.3% 52.1%
3248192 7581.1.1.39 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA 0.59 46.0 2.84e-01 86.2% 88.7%
4928248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.71e-01 87.7% 65.4%
3276546 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.57 40.0 2.52e-01 73.8% 84.3%
3716174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 42.0 3.56e-01 80.0% 56.4%
3574714 109.26.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.56 44.0 3.13e-01 84.6% 60.0%
3225405 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 42.0 3.19e-01 98.5% 36.4%
4125761 219.1.1.17 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.55 41.0 2.70e-01 81.5% 18.9%
3423775 601.16.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.55 37.0 2.82e-01 70.8% 87.1%
3595048 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 41.0 2.76e-01 89.2% 19.6%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 39.0 2.84e-01 75.4% 34.1%
2043418 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.53 37.0 2.73e-01 80.0% 27.4%
3403813 603.2.1.12 ↗ alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.53 45.0 2.87e-01 98.5% 98.9%
3470968 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.53 41.0 2.85e-01 81.5% 48.8%
None — 0.53 41.0 2.84e-01 81.5% 48.8%
4020403 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.52 44.0 2.70e-01 93.8% 58.6%
3940660 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.52 43.0 2.58e-01 100.0% 47.2%
4867315 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.52 36.0 2.69e-01 78.5% 27.8%
990463 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.51 39.0 2.86e-01 98.5% 27.6%
3244142 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.51 35.0 2.41e-01 70.8% 64.3%
3213226 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.51 39.0 3.91e-01 80.0% 86.2%