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MT408532.1__QJT70071.1__SynMITS9220M01_058__00055

Bact-Vir

MT408532.1__QJT70071.1__SynMITS9220M01_058__00055

Identity

Accession:
MT408532 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 47.0 3.00e-01 76.5% 20.8%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 43.0 3.16e-01 88.2% 25.1%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.64 46.0 2.97e-01 76.5% 21.5%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 49.0 4.58e-01 86.8% 72.1%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 47.0 3.10e-01 80.9% 44.8%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.60 48.0 3.81e-01 89.7% 71.1%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.60 45.0 3.82e-01 82.4% 67.5%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 50.0 3.07e-01 95.6% 45.5%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 50.0 4.22e-01 100.0% 89.5%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.58 41.0 3.63e-01 75.0% 50.5%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 46.0 2.97e-01 88.2% 42.5%
3mydA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.58 48.0 3.83e-01 94.1% 88.9%
3zpyB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.30e-01 97.1% 58.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 49.0 3.07e-01 95.6% 36.9%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 50.0 4.25e-01 100.0% 93.8%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.56 46.0 3.84e-01 91.2% 57.5%
6muwM00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 47.0 3.40e-01 97.1% 56.3%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.56 50.0 3.80e-01 100.0% 81.5%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 4.14e-01 97.1% 100.0%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.56 45.0 4.09e-01 91.2% 78.1%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 43.0 2.59e-01 86.8% 54.7%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 47.0 4.05e-01 100.0% 99.1%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 3.20e-01 83.8% 34.1%
3d22A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 47.0 3.92e-01 100.0% 84.5%
2lrcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 4.02e-01 98.5% 99.1%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 4.02e-01 98.5% 100.0%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 4.05e-01 100.0% 100.0%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.05e-01 95.6% 61.6%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.29e-01 83.8% 70.9%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.27e-01 95.6% 64.1%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 41.0 3.14e-01 85.3% 58.2%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 46.0 3.97e-01 100.0% 97.3%
8himB01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 45.0 3.55e-01 97.1% 91.4%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.90e-01 97.1% 100.0%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.19e-01 100.0% 74.0%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 43.0 4.14e-01 100.0% 82.3%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.78e-01 100.0% 89.2%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 42.0 3.44e-01 91.2% 95.3%
2nbsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.76e-01 100.0% 90.5%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 40.0 3.12e-01 85.3% 96.7%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 36.0 2.57e-01 76.5% 23.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.81e-01 80.9% 95.8%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 36.0 3.05e-01 77.9% 74.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.19e-01 85.3% 61.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244257 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 52.0 3.51e-01 100.0% 22.3%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 55.0 5.03e-01 100.0% 71.1%
3228083 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 53.0 3.60e-01 100.0% 23.8%
4999447 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 56.0 3.74e-01 100.0% 45.0%
3974486 3797.1.1.0 beta meanders › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 0.64 41.0 4.21e-01 76.5% 67.7%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.64 46.0 4.40e-01 76.5% 72.5%
3576228 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 53.0 4.89e-01 95.6% 71.7%
4443103 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.62 55.0 4.72e-01 100.0% 80.9%
4612008 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.61 46.0 4.03e-01 82.4% 78.1%
3294867 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.60 43.0 3.87e-01 76.5% 91.6%
4829352 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.60 51.0 3.15e-01 100.0% 40.5%
3271614 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 45.0 3.28e-01 89.7% 30.0%
3694441 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 49.0 4.13e-01 100.0% 91.2%
3449073 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 51.0 4.14e-01 100.0% 86.2%
3935038 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 47.0 4.56e-01 94.1% 81.0%
2527301 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 48.0 4.19e-01 98.5% 94.6%
3493272 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 48.0 4.20e-01 98.5% 99.1%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.57 41.0 3.72e-01 76.5% 83.2%
3516442 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 48.0 4.19e-01 100.0% 90.4%
3407386 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 48.0 4.25e-01 98.5% 100.0%
3655079 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 50.0 4.14e-01 100.0% 89.4%
3719195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.09e-01 98.5% 38.5%
3624033 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 50.0 4.22e-01 100.0% 95.7%
2675336 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 47.0 4.12e-01 97.1% 96.4%
3400787 5.1.4.408 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C 0.56 47.0 2.84e-01 95.6% 31.9%
3968393 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.56 46.0 3.97e-01 91.2% 76.4%
3497478 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.56 43.0 3.07e-01 83.8% 27.9%
3647540 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 49.0 4.11e-01 100.0% 93.3%
2130293 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.55 46.0 2.93e-01 100.0% 41.0%
3744129 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 46.0 3.01e-01 92.6% 64.7%
3288997 304.125.1.2 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins › DUF6461 0.55 43.0 3.47e-01 89.7% 81.3%
4474081 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.55 45.0 3.99e-01 91.2% 79.0%
3990887 375.1.1.89 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.55 37.0 4.05e-01 72.1% 98.2%
5016305 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 39.0 3.49e-01 75.0% 81.1%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 38.0 3.66e-01 91.2% 62.5%
4028480 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.53 47.0 4.01e-01 98.5% 99.1%
3876642 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 2.71e-01 91.2% 22.3%
4499400 211.1.1.52 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF29319 0.53 45.0 3.69e-01 100.0% 71.1%
3668413 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 44.0 3.66e-01 97.1% 96.9%
3579842 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.53 41.0 2.65e-01 88.2% 37.6%
3215968 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 45.0 3.93e-01 100.0% 100.0%
3253595 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 41.0 3.26e-01 89.7% 69.7%
3494351 9.1.1.50 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.52 39.0 3.12e-01 80.9% 51.1%
3997522 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 42.0 3.71e-01 95.6% 99.1%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.65e-01 91.2% 23.9%
3419538 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.52 43.0 3.51e-01 97.1% 97.9%
3255179 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 44.0 3.46e-01 100.0% 64.4%
3793797 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.52 41.0 2.75e-01 91.2% 25.9%
3839042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.77e-01 77.9% 100.0%
3643023 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 43.0 3.47e-01 95.6% 97.9%
3430829 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 43.0 3.48e-01 97.1% 96.4%
3426456 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 43.0 3.33e-01 97.1% 84.4%
3455688 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 44.0 3.71e-01 100.0% 92.5%
3744781 109.4.1.69 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.51 42.0 2.76e-01 92.6% 55.7%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.18e-01 72.1% 56.8%
3512816 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.50 43.0 2.74e-01 97.1% 46.3%