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MT408532.1__QJT70152.1__SynMITS9220M01_139__00136

Bact-Vir

MT408532.1__QJT70152.1__SynMITS9220M01_139__00136

Identity

Accession:
MT408532 ↗
Kingdom:
phage

Quality

53.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-198
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 27.0 3.94e-01 82.4% 100.0%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 26.0 3.78e-01 81.8% 100.0%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 26.0 3.55e-01 89.9% 96.0%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 26.0 3.35e-01 82.4% 89.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 24.0 2.98e-01 84.9% 63.2%
3592540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 23.0 3.41e-01 79.9% 98.3%
D2 medium residues 378-521
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.82 51.0 5.94e-01 72.2% 85.6%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 40.0 4.61e-01 83.3% 63.3%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.82 59.0 4.96e-01 74.3% 85.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.81 45.0 6.01e-01 79.2% 98.8%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.80 39.0 4.85e-01 86.1% 74.7%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.74 48.0 4.90e-01 88.2% 66.7%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.74 49.0 4.87e-01 74.3% 64.2%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 53.0 4.33e-01 74.3% 84.0%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 53.0 4.63e-01 74.3% 84.8%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.69 50.0 5.20e-01 74.3% 91.0%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.68 49.0 4.54e-01 73.6% 83.1%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 48.0 4.08e-01 74.3% 76.0%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.67 51.0 3.94e-01 95.1% 36.7%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.67 47.0 4.61e-01 71.5% 74.8%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.64 37.0 4.74e-01 100.0% 97.6%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 45.0 5.17e-01 72.9% 100.0%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 45.0 5.14e-01 77.8% 100.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 45.0 5.10e-01 75.0% 100.0%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 50.0 4.01e-01 84.0% 77.1%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.58 53.0 4.42e-01 97.2% 76.9%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 45.0 4.87e-01 81.2% 95.8%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 44.0 4.73e-01 82.6% 91.9%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 44.0 4.65e-01 82.6% 99.2%
2fsfB04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.50 35.0 3.14e-01 72.9% 75.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935107 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.81 56.0 6.39e-01 74.3% 91.8%
3416168 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.80 58.0 4.94e-01 74.3% 86.4%
3174776 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.79 58.0 4.89e-01 75.7% 85.8%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.78 57.0 4.88e-01 74.3% 85.1%
3896686 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.78 50.0 5.97e-01 77.1% 94.0%
3702706 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.77 43.0 5.73e-01 93.8% 100.0%
3489761 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.76 53.0 4.48e-01 70.1% 85.8%
3522521 5086.1.1.90 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I 0.75 53.0 5.40e-01 72.2% 81.4%
3892397 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.74 55.0 4.26e-01 75.7% 79.3%
3667580 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 53.0 4.29e-01 74.3% 70.9%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 55.0 4.69e-01 98.6% 51.2%
3575539 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.73 52.0 5.38e-01 72.2% 86.7%
3607008 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.73 44.0 5.36e-01 97.9% 91.6%
3784582 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.73 53.0 4.36e-01 75.7% 80.8%
3676126 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 48.0 4.22e-01 97.9% 47.5%
3237696 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.72 52.0 4.86e-01 74.3% 79.4%
3401214 3755.3.1.345 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Hobbit 0.72 52.0 5.27e-01 74.3% 86.2%
5039649 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 51.0 5.54e-01 72.2% 96.7%
3444302 611.9.1.4 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.72 51.0 5.28e-01 72.9% 97.8%
3470751 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.71 53.0 5.10e-01 76.4% 91.9%
3847361 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.71 51.0 4.24e-01 74.3% 72.6%
3420977 3755.4.1.17 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.70 51.0 5.02e-01 73.6% 96.7%
4030523 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.70 51.0 4.41e-01 74.3% 82.8%
3733140 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 50.0 4.85e-01 93.1% 68.4%
3705838 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 49.0 4.18e-01 72.9% 80.0%
3697355 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 49.0 4.84e-01 93.1% 68.4%
5033256 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.68 48.0 4.60e-01 71.5% 85.5%
3194777 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.68 45.0 4.92e-01 70.8% 80.8%
3705545 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.67 50.0 4.66e-01 76.4% 93.1%
3528691 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.67 48.0 5.16e-01 86.8% 85.6%
4377016 5001.1.1.32 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.67 48.0 3.76e-01 74.3% 83.1%
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 48.0 5.27e-01 99.3% 92.2%
3635333 192.15.1.46 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Ribophorin_II_C 0.66 34.0 3.78e-01 71.5% 60.9%
4956385 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 61.0 5.68e-01 100.0% 97.1%
None 0.65 59.0 5.06e-01 97.9% 64.1%
3635960 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.64 55.0 4.34e-01 90.3% 63.9%
3957435 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.63 40.0 4.37e-01 93.8% 76.7%
3421052 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.63 57.0 4.77e-01 97.2% 66.8%
3380500 192.29.1.34 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF677 0.62 56.0 4.90e-01 95.8% 99.0%
2773631 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.62 52.0 4.74e-01 90.3% 86.1%
4987373 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.61 45.0 4.82e-01 91.0% 90.8%
3816459 3684.1.1.10 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF677 0.60 53.0 4.81e-01 96.5% 100.0%
3906366 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.60 55.0 5.32e-01 100.0% 98.8%
3798573 601.1.1.5 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C 0.59 45.0 4.45e-01 79.9% 85.8%
5073100 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.58 54.0 4.55e-01 100.0% 99.1%
3801867 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.58 50.0 4.31e-01 90.3% 86.0%
3744877 4323.1.1.2 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.57 51.0 4.89e-01 97.2% 95.8%
4890998 148.1.3.28 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.55 42.0 3.31e-01 79.2% 48.0%
3587197 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 41.0 4.07e-01 77.8% 99.3%
5007978 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 44.0 4.58e-01 90.3% 94.8%
4935669 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.53 44.0 4.47e-01 89.6% 93.6%
D3 medium residues 603-710_777-798
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.62 34.0 3.72e-01 76.2% 63.6%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.96e-01 83.1% 90.8%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 39.0 3.15e-01 78.5% 63.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3752879 513.1.1.0 a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain 0.58 31.0 3.83e-01 75.4% 83.7%
3642648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 37.0 4.33e-01 71.5% 100.0%
3600926 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 4.08e-01 90.8% 79.3%
4024816 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 38.0 2.67e-01 82.3% 23.6%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.51 40.0 3.53e-01 82.3% 81.1%
4968082 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 39.0 3.36e-01 82.3% 86.9%
D4 medium residues 711-776
PDB
D5 medium residues 799-831_948-961_1064-1131
PDB