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MT410774.1__QJT71652.1__X__00020

Bact-Vir

MT410774.1__QJT71652.1__X__00020

Identity

Accession:
MT410774 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacillus_phage_Spoks

TaxID: 2736239

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: rep: OP341626.1__UYL93985.1__PK35_gp20__00020__D2-59
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 6.10e-01 100.0% 89.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.08e-01 100.0% 66.7%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.71 48.0 3.66e-01 71.7% 40.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.09e-01 100.0% 68.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.38e-01 98.1% 89.8%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.63 55.0 4.12e-01 100.0% 98.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 36.0 3.07e-01 100.0% 33.7%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.46e-01 100.0% 85.0%
3d8kD00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 40.0 2.55e-01 79.2% 88.4%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 49.0 3.69e-01 100.0% 41.7%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.01e-01 100.0% 56.2%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.44e-01 100.0% 43.9%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 46.0 3.39e-01 100.0% 33.8%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 44.0 3.49e-01 100.0% 43.2%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 36.0 3.55e-01 71.7% 91.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 3.71e-01 100.0% 52.1%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.44e-01 94.3% 96.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.52 46.0 3.32e-01 100.0% 70.5%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 37.0 2.49e-01 84.9% 87.8%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 42.0 3.49e-01 100.0% 55.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.74e-01 100.0% 97.8%
4031509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.01e-01 100.0% 76.7%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 5.17e-01 100.0% 82.8%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 41.0 4.33e-01 100.0% 84.4%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.60 52.0 5.15e-01 100.0% 94.5%
4237650 3325.1.1.1 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.58 45.0 3.60e-01 86.8% 93.9%
4941559 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.19e-01 100.0% 100.0%
3441052 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 49.0 3.72e-01 100.0% 98.5%
5007731 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.57 41.0 4.13e-01 88.7% 78.2%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.56 46.0 4.16e-01 100.0% 73.8%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 40.0 4.07e-01 100.0% 84.0%
3927342 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 39.0 3.28e-01 100.0% 42.0%
4989696 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 45.0 3.60e-01 100.0% 62.6%
3170065 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 40.0 2.45e-01 84.9% 86.3%
5078711 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.10e-01 83.0% 68.3%
3225707 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 38.0 3.67e-01 100.0% 68.6%
3630069 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.51 42.0 2.44e-01 96.2% 15.4%