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MT413450.1__QJQ38264.2__X__00101

Bact-Vir

MT413450.1__QJQ38264.2__X__00101

Identity

Accession:
MT413450 ↗
Kingdom:
phage

Quality

67.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Pbunavirus› Pseudomonas_phage_Epa15

TaxID: 2733395

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 174-257
PDB
Domain cluster: rep: OR067833.1__WLW40854.1__GNAINCEL_00072__00072__D150-235
D2 high residues 906-985
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00265__D133-216
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.64 41.0 4.21e-01 100.0% 67.1%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.60 33.0 4.20e-01 78.8% 95.6%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 43.0 3.61e-01 77.5% 53.1%
2wqpA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.58 40.0 4.17e-01 80.0% 78.1%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.74e-01 87.5% 78.3%
2k52A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.92e-01 93.8% 75.7%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.02e-01 93.8% 66.7%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.67e-01 85.0% 66.3%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 37.0 3.52e-01 73.8% 88.7%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 37.0 3.61e-01 73.8% 97.7%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 32.0 3.56e-01 88.7% 78.1%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.69e-01 93.8% 70.1%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 33.0 2.69e-01 100.0% 33.8%
3psiA06 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.54e-01 96.2% 63.0%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 2.88e-01 80.0% 41.0%
2dluA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 3.67e-01 88.7% 75.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004633 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 38.0 3.69e-01 93.8% 57.8%
5083817 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.57 43.0 4.76e-01 85.0% 100.0%
5052170 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.56 44.0 3.97e-01 95.0% 60.9%
3827546 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 38.0 3.75e-01 95.0% 65.9%
3385762 4951.1.1.0 ↗ alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit 0.56 45.0 4.53e-01 88.7% 100.0%
4147443 2.1.1.38 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.55 37.0 3.74e-01 100.0% 68.8%
3990253 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.55 45.0 3.84e-01 95.0% 55.0%
3594503 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 45.0 3.90e-01 95.0% 58.4%
3258976 2.1.1.116 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 0.54 37.0 3.41e-01 72.5% 73.3%
3494556 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 47.0 3.85e-01 100.0% 78.7%
3295847 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 38.0 3.46e-01 93.8% 56.2%
3665217 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.53 42.0 3.57e-01 90.0% 70.0%
4299499 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 44.0 3.27e-01 100.0% 51.7%
4533079 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 38.0 3.72e-01 93.8% 71.8%
4629157 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 38.0 3.37e-01 95.0% 53.9%
3827560 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.51 36.0 3.40e-01 73.8% 84.2%
3389527 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.59e-01 93.8% 68.9%
3684440 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 33.0 3.39e-01 95.0% 67.5%
D3 medium residues 110-163
PDB
Domain cluster: rep: OR067833.1__WLW40854.1__GNAINCEL_00072__00072__D91-135
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.89 59.0 6.06e-01 77.8% 72.5%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.88 58.0 6.20e-01 77.8% 77.1%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.81 60.0 5.33e-01 79.6% 65.8%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 4.88e-01 74.1% 72.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 4.32e-01 75.9% 52.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 48.0 4.76e-01 85.2% 66.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 39.0 3.37e-01 77.8% 36.0%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 39.0 4.09e-01 77.8% 68.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 3.93e-01 85.2% 52.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 3.79e-01 81.5% 45.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.63 44.0 4.74e-01 74.1% 95.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.62 49.0 3.47e-01 96.3% 26.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.23e-01 83.3% 69.6%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 43.0 4.30e-01 90.7% 70.2%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 51.0 3.76e-01 94.4% 84.1%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 41.0 2.46e-01 83.3% 9.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.22e-01 83.3% 70.8%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.60 38.0 3.80e-01 79.6% 61.4%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.60 49.0 3.68e-01 92.6% 66.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.88e-01 75.9% 59.1%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 35.0 3.43e-01 72.2% 50.8%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 41.0 3.49e-01 74.1% 50.5%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 3.09e-01 77.8% 39.6%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 44.0 3.70e-01 83.3% 51.6%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.31e-01 79.6% 47.0%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 3.75e-01 90.7% 63.5%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.45e-01 83.3% 56.1%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.45e-01 77.8% 80.9%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.23e-01 90.7% 34.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.48e-01 83.3% 68.2%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.96e-01 77.8% 72.9%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.41e-01 77.8% 89.6%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.20e-01 77.8% 44.1%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 38.0 3.29e-01 72.2% 88.6%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.20e-01 77.8% 99.1%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.56e-01 79.6% 54.5%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.99e-01 79.6% 74.5%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 44.0 3.48e-01 88.9% 88.4%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 41.0 3.45e-01 79.6% 73.1%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 39.0 2.91e-01 75.9% 49.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.72e-01 83.3% 66.1%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.30e-01 90.7% 51.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 42.0 3.75e-01 87.0% 67.5%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 2.60e-01 83.3% 69.8%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.53 46.0 3.16e-01 100.0% 47.2%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.53 38.0 3.24e-01 75.9% 81.1%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.39e-01 79.6% 89.8%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 37.0 3.09e-01 75.9% 41.6%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.53 36.0 3.50e-01 72.2% 68.9%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.53 38.0 3.32e-01 77.8% 91.9%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.51e-01 81.5% 58.9%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.52 33.0 3.00e-01 79.6% 46.1%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.27e-01 74.1% 51.3%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 39.0 2.99e-01 87.0% 87.8%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 39.0 3.05e-01 83.3% 39.1%
2z2mD01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 33.0 3.25e-01 81.5% 57.6%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 40.0 2.92e-01 90.7% 54.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951165 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.77 50.0 5.00e-01 75.9% 65.5%
4123857 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.76 46.0 5.15e-01 79.6% 82.5%
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 49.0 5.07e-01 75.9% 72.0%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 4.75e-01 75.9% 59.7%
4578838 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.74 48.0 4.85e-01 79.6% 65.5%
4006301 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.73 50.0 5.04e-01 85.2% 70.9%
4981303 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 49.0 4.89e-01 79.6% 69.1%
3251414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.03e-01 88.9% 37.3%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.71 47.0 4.85e-01 75.9% 74.0%
5064515 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 48.0 4.69e-01 90.7% 65.0%
4505321 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 49.0 4.95e-01 90.7% 72.7%
5036381 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.70 48.0 4.67e-01 85.2% 65.0%
5012286 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.69 47.0 4.59e-01 85.2% 65.0%
3926430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.70e-01 83.3% 68.3%
3718008 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.77e-01 85.2% 78.0%
3647911 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.81e-01 72.2% 97.1%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.67e-01 92.6% 62.9%
4980675 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 50.0 3.83e-01 79.6% 47.5%
3829109 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.67 48.0 4.53e-01 75.9% 76.9%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.68e-01 75.9% 72.7%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 47.0 4.39e-01 75.9% 61.5%
5040729 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.66 47.0 3.68e-01 75.9% 39.1%
3614175 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 47.0 3.75e-01 77.8% 38.2%
3781383 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 3.93e-01 75.9% 47.8%
3291905 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 46.0 4.67e-01 75.9% 94.5%
4949079 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 49.0 4.32e-01 81.5% 71.2%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.64 47.0 4.32e-01 90.7% 60.0%
3502668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.15e-01 85.2% 60.0%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.63 50.0 4.33e-01 94.4% 55.3%
3317456 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 48.0 3.90e-01 81.5% 86.0%
4999858 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 50.0 3.31e-01 85.2% 26.4%
3447819 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 48.0 4.39e-01 83.3% 65.7%
3737863 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.62 42.0 3.38e-01 81.5% 36.2%
4002138 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 41.0 2.70e-01 70.4% 83.5%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.61 38.0 4.10e-01 75.9% 73.3%
4949932 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 48.0 3.52e-01 85.2% 37.9%
5033424 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.60 50.0 4.85e-01 90.7% 80.0%
3959244 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.60 48.0 4.02e-01 87.0% 62.2%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 48.0 4.18e-01 90.7% 72.9%
3315166 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 44.0 3.74e-01 81.5% 87.8%
3444858 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.59 50.0 3.09e-01 100.0% 62.0%
5005720 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 45.0 3.49e-01 85.2% 44.0%
4096587 3174.2.1.2 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › OrtA 0.58 43.0 3.74e-01 83.3% 65.6%
4980703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 51.0 3.73e-01 96.3% 47.1%
4188650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 41.0 3.39e-01 77.8% 81.9%
3335092 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 40.0 3.71e-01 79.6% 57.1%
3276225 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 39.0 3.14e-01 72.2% 63.6%
5032200 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 42.0 3.45e-01 81.5% 61.0%
4046343 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.56 39.0 3.37e-01 75.9% 45.6%
4048745 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.56 41.0 3.48e-01 79.6% 48.9%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 40.0 2.91e-01 77.8% 88.0%
4238204 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 41.0 3.43e-01 83.3% 82.9%
3934912 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.23e-01 90.7% 43.9%
4124695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.30e-01 75.9% 74.4%
4009943 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 41.0 3.17e-01 83.3% 48.0%
5054433 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 4.02e-01 79.6% 80.0%
3256690 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.53 41.0 3.04e-01 83.3% 32.9%
4330501 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.53 42.0 3.30e-01 88.9% 42.5%
3670690 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.69e-01 92.6% 36.0%
4285674 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.53 40.0 3.39e-01 81.5% 48.9%
3282699 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 39.0 3.18e-01 83.3% 50.4%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.44e-01 83.3% 61.2%
3586782 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 41.0 3.34e-01 87.0% 64.0%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.51 37.0 2.82e-01 79.6% 37.9%
4030885 211.1.1.6 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.51 40.0 2.91e-01 88.9% 55.0%
4027119 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 38.0 2.82e-01 79.6% 37.0%
3907200 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 38.0 2.17e-01 85.2% 6.7%
D4 medium residues 279-343
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wuhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.32e-01 96.9% 61.3%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 42.0 4.02e-01 100.0% 83.1%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.28e-01 100.0% 83.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937314 520.2.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.54 40.0 3.89e-01 100.0% 72.0%
4000939 62.1.1.1 ↗ beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.53 38.0 2.57e-01 78.5% 52.3%
3372356 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.53 34.0 3.12e-01 75.4% 47.8%
137631 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 43.0 3.32e-01 96.9% 61.3%
3485098 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 43.0 3.26e-01 95.4% 58.2%
3603387 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.14e-01 95.4% 55.7%
3211468 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 42.0 3.22e-01 95.4% 58.8%
4150736 5095.1.1.0 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.51 42.0 3.18e-01 93.8% 72.1%
3415803 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 43.0 3.26e-01 95.4% 61.9%
3749561 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 42.0 3.65e-01 100.0% 87.6%
4666109 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.50 37.0 2.99e-01 83.1% 68.7%
D5 medium residues 725-787
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.66 54.0 3.23e-01 100.0% 11.6%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 56.0 3.30e-01 100.0% 13.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 52.0 3.48e-01 100.0% 75.3%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 49.0 3.10e-01 98.4% 74.8%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 4.21e-01 76.2% 73.8%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.58 39.0 3.36e-01 71.4% 54.2%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 44.0 3.39e-01 84.1% 88.8%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.56 45.0 3.70e-01 90.5% 68.9%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.55 42.0 3.82e-01 87.3% 59.6%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.98e-01 98.4% 78.8%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 45.0 2.71e-01 98.4% 14.2%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 37.0 2.51e-01 73.0% 40.8%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 44.0 3.28e-01 98.4% 62.5%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 41.0 2.72e-01 87.3% 89.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.53 39.0 3.11e-01 82.5% 65.3%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.53 35.0 3.63e-01 76.2% 77.2%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.52 42.0 3.51e-01 95.2% 81.7%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.92e-01 100.0% 87.1%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.51 37.0 3.08e-01 77.8% 76.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 3.28e-01 74.6% 78.2%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 38.0 2.60e-01 81.0% 27.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 43.0 3.41e-01 100.0% 56.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706524 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.62 52.0 3.45e-01 100.0% 79.0%
4327587 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 51.0 3.68e-01 96.8% 49.7%
3240041 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.59 49.0 3.23e-01 100.0% 66.2%
3930756 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.57 47.0 2.96e-01 98.4% 72.2%
3742644 5.1.4.342 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EDC4L 0.57 45.0 2.84e-01 90.5% 34.0%
5039683 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.85e-01 92.1% 33.9%
3518767 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.56 46.0 3.08e-01 100.0% 51.1%
3452428 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 42.0 2.69e-01 82.5% 42.3%
4991490 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 3.85e-01 74.6% 70.8%
4302400 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.55 44.0 2.68e-01 95.2% 28.3%
4003785 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.55 46.0 3.04e-01 96.8% 48.1%
3832937 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 44.0 2.88e-01 93.7% 28.7%
3921266 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.55 45.0 2.73e-01 96.8% 55.1%
3621408 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.55 43.0 2.83e-01 92.1% 35.4%
3291683 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.54 46.0 4.18e-01 100.0% 83.3%
3429680 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.53 40.0 3.21e-01 82.5% 60.8%
4974812 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 2.92e-01 98.4% 58.4%
3689391 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.53 40.0 3.21e-01 84.1% 44.2%
3726946 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.53 40.0 3.39e-01 85.7% 80.9%
3633368 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.51 37.0 3.06e-01 81.0% 74.1%
3687870 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.51 34.0 2.88e-01 71.4% 74.2%
3427521 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.51 43.0 3.23e-01 95.2% 70.0%
3455400 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 42.0 2.79e-01 98.4% 38.4%
3346346 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 42.0 2.77e-01 96.8% 55.0%
3934097 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 42.0 3.32e-01 95.2% 70.0%
3168516 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 37.0 2.98e-01 84.1% 57.3%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.84e-01 98.4% 40.8%
3436557 220.4.1.8 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.50 36.0 3.44e-01 76.2% 88.0%
3535572 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.50 42.0 3.30e-01 98.4% 42.9%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.50 35.0 3.48e-01 73.0% 87.7%