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MT416612.2__QKE56415.1__X__00066

Bact-Vir

MT416612.2__QKE56415.1__X__00066

Identity

Accession:
MT416612 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-66
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.83 63.0 4.54e-01 100.0% 30.2%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 59.0 4.14e-01 100.0% 26.0%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 61.0 4.27e-01 100.0% 28.0%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 60.0 4.38e-01 100.0% 31.2%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 6.30e-01 98.2% 93.8%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.79 59.0 4.23e-01 100.0% 28.7%
1zzwA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.78 59.0 4.26e-01 100.0% 30.6%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 5.91e-01 100.0% 86.8%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.76 58.0 3.99e-01 100.0% 25.4%
3ilvA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 58.0 3.56e-01 100.0% 14.4%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.69e-01 98.2% 91.7%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.74 59.0 4.12e-01 100.0% 28.2%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 5.52e-01 98.2% 95.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 47.0 5.17e-01 100.0% 86.4%
3c1dB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.88e-01 100.0% 88.7%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.69 46.0 4.91e-01 100.0% 84.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 4.48e-01 100.0% 56.4%
3sdbA03 1.10.10.1140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Glutamine-dependent NAD+ synthetase, C-terminal domain 0.67 58.0 4.56e-01 100.0% 52.8%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.67 58.0 4.99e-01 100.0% 65.2%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 44.0 4.83e-01 100.0% 92.7%
3k7aM01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 41.0 3.23e-01 73.2% 30.2%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 49.0 4.09e-01 100.0% 45.4%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.64 56.0 4.67e-01 98.2% 92.8%
3on4D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 49.0 3.46e-01 100.0% 26.5%
6lcuA02 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.63 53.0 4.43e-01 100.0% 61.0%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 46.0 4.48e-01 100.0% 75.0%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 49.0 4.38e-01 98.2% 82.4%
3zuxA00 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.58 45.0 2.95e-01 92.9% 24.4%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 45.0 3.80e-01 91.1% 50.0%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.57 37.0 2.79e-01 71.4% 26.6%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 46.0 3.03e-01 100.0% 39.3%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.55 46.0 3.05e-01 100.0% 21.5%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.55 43.0 4.07e-01 100.0% 71.2%
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.53 45.0 2.96e-01 100.0% 23.7%
1beoA00 1.10.239.10 Mainly Alpha › Orthogonal Bundle › Beta-cryptogein › Elicitin domain 0.53 39.0 3.44e-01 85.7% 81.6%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.06e-01 94.6% 30.5%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.96e-01 96.4% 27.4%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 40.0 3.38e-01 92.9% 83.5%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 41.0 3.32e-01 92.9% 53.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3885759 2007.2.3.11 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.83 63.0 4.53e-01 100.0% 31.0%
3499636 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.82 62.0 4.35e-01 100.0% 27.3%
4167193 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.79 58.0 6.22e-01 98.2% 97.8%
3439696 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.78 58.0 5.70e-01 100.0% 75.0%
3733761 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.78 59.0 4.04e-01 100.0% 25.0%
3319321 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.78 55.0 5.90e-01 94.6% 93.3%
3170895 2004.1.3.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.75 61.0 3.95e-01 100.0% 20.4%
3488926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 55.0 5.57e-01 98.2% 80.0%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.72 53.0 5.22e-01 100.0% 75.0%
4960595 101.1.1.549 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_5 0.70 55.0 4.95e-01 100.0% 61.3%
4022380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 4.30e-01 100.0% 43.8%
3705962 2007.2.3.11 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.69 59.0 3.89e-01 100.0% 24.2%
3949018 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 55.0 4.67e-01 100.0% 52.6%
None 0.69 58.0 3.94e-01 100.0% 26.0%
3619884 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.69 61.0 4.25e-01 100.0% 39.4%
3597092 604.5.1.55 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PqiA 0.69 47.0 3.21e-01 73.2% 21.9%
1088836 101.38.1.0 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep 0.67 58.0 4.57e-01 100.0% 49.2%
4995825 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.65 54.0 5.16e-01 100.0% 90.0%
3922247 242.2.1.6 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 0.64 41.0 4.44e-01 94.6% 80.0%
3224157 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.63 52.0 4.73e-01 98.2% 67.5%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 52.0 4.74e-01 100.0% 70.0%
3442602 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 50.0 4.30e-01 98.2% 59.0%
3916954 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.61 52.0 3.93e-01 100.0% 89.0%
4954371 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 49.0 4.63e-01 100.0% 74.3%
3739470 192.2.1.31 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.59 43.0 3.24e-01 80.4% 31.7%
3938199 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 46.0 3.27e-01 91.1% 38.9%
4953311 604.20.1.0 alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 0.55 42.0 3.67e-01 98.2% 51.0%
3283379 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.54 45.0 3.78e-01 100.0% 52.4%
4954786 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 38.0 3.42e-01 78.6% 51.8%
4189563 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.54 41.0 3.66e-01 91.1% 71.9%
3694011 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 41.0 3.04e-01 96.4% 75.7%
3485924 3291.1.1.152 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CDK5RAP3 0.52 42.0 2.90e-01 96.4% 23.6%
4934986 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.52 39.0 3.10e-01 91.1% 36.9%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.52 34.0 3.53e-01 85.7% 67.9%
4970400 3542.1.1.2 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP 0.51 42.0 2.84e-01 100.0% 51.4%
4253545 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.51 41.0 3.76e-01 89.3% 74.7%
3459782 131.1.1.22 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › DUF6817 0.51 41.0 2.71e-01 100.0% 20.4%
3611747 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 33.0 3.37e-01 100.0% 69.1%
3285685 4107.1.1.1 alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.51 41.0 3.01e-01 100.0% 47.4%
D2 medium residues 117-185
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 59.0 6.22e-01 87.0% 72.6%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 63.0 5.80e-01 88.4% 58.8%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 59.0 6.10e-01 89.9% 72.7%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 62.0 6.02e-01 89.9% 67.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 61.0 6.25e-01 88.4% 77.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 67.0 5.97e-01 100.0% 60.6%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 66.0 6.18e-01 95.7% 68.3%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 54.0 5.23e-01 88.4% 58.4%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 67.0 5.75e-01 95.7% 55.3%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 57.0 6.00e-01 87.0% 76.2%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 58.0 6.06e-01 87.0% 76.6%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 62.0 5.37e-01 95.7% 54.1%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 63.0 5.37e-01 95.7% 52.9%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 56.0 5.42e-01 97.1% 64.1%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 61.0 4.82e-01 100.0% 41.9%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 5.26e-01 100.0% 43.7%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.14e-01 95.7% 47.5%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.83e-01 100.0% 62.2%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 55.0 5.35e-01 89.9% 65.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 5.02e-01 100.0% 42.1%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 55.0 5.98e-01 87.0% 84.5%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.10e-01 100.0% 43.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 60.0 4.69e-01 100.0% 39.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 5.30e-01 100.0% 47.0%
2fokB01 3.90.241.10 Alpha Beta › Alpha-Beta Complex › FokI Restriction Endonuclease; Chain A, domain 1 › Foki Restriction Endonuclease, Chain A, domain 1 0.78 70.0 4.61e-01 100.0% 39.1%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 4.72e-01 97.1% 51.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 65.0 5.05e-01 100.0% 44.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 4.99e-01 100.0% 44.2%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 5.02e-01 100.0% 44.3%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 5.08e-01 100.0% 45.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 5.50e-01 100.0% 61.0%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 5.35e-01 100.0% 69.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 4.63e-01 100.0% 41.3%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.42e-01 89.9% 76.4%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.21e-01 87.0% 79.4%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 5.00e-01 100.0% 49.7%
1xn7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.51e-01 87.0% 83.3%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 49.0 3.23e-01 82.6% 93.6%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 49.0 3.29e-01 87.0% 88.8%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.57 46.0 3.64e-01 87.0% 62.2%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.02e-01 95.7% 56.5%
3guxA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 43.0 3.04e-01 87.0% 93.9%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 44.0 4.01e-01 91.3% 93.9%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 47.0 3.36e-01 100.0% 78.0%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.71e-01 89.9% 92.0%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 2.98e-01 84.1% 94.8%
1vm8B01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 41.0 2.61e-01 87.0% 86.2%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 37.0 3.39e-01 79.7% 75.3%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 40.0 2.94e-01 92.8% 71.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932334 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.89 81.0 4.74e-01 97.1% 38.2%
4029392 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.88 71.0 5.05e-01 92.8% 31.9%
3278855 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.87 64.0 6.59e-01 88.4% 81.5%
5036707 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.86 69.0 6.07e-01 95.7% 61.1%
3468223 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.86 68.0 4.22e-01 92.8% 16.8%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.84 68.0 4.89e-01 92.8% 32.4%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.83 66.0 4.74e-01 91.3% 31.1%
5042935 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.83 62.0 5.49e-01 91.3% 56.8%
4945595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 66.0 5.45e-01 88.4% 50.4%
None 0.82 65.0 4.71e-01 91.3% 31.9%
3783244 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.82 66.0 4.53e-01 92.8% 26.7%
3657248 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.81 68.0 5.82e-01 89.9% 64.8%
3464534 101.1.2.641 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.80 67.0 3.90e-01 89.9% 12.3%
5053936 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.80 67.0 5.44e-01 100.0% 49.6%
4201034 101.1.2.41 alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.80 71.0 5.52e-01 100.0% 75.3%
3955994 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.79 66.0 6.09e-01 91.3% 71.8%
4443506 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.79 65.0 3.90e-01 92.8% 14.9%
3255511 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.78 70.0 4.95e-01 95.7% 81.1%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 5.43e-01 100.0% 50.0%
3823425 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.78 65.0 4.59e-01 91.3% 33.2%
4951172 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 66.0 5.63e-01 95.7% 61.0%
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.75 66.0 4.69e-01 95.7% 76.9%
3611256 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.75 67.0 3.85e-01 95.7% 11.5%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 4.71e-01 95.7% 81.1%
3509042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 5.16e-01 95.7% 50.0%
3599724 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.74 65.0 4.96e-01 92.8% 44.1%
5005222 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.74 66.0 6.01e-01 100.0% 74.4%
5066984 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.74 62.0 5.90e-01 100.0% 78.8%
3465479 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.74 63.0 4.21e-01 94.2% 76.5%
5059468 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.73 64.0 5.97e-01 100.0% 77.6%
3930816 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.73 66.0 4.23e-01 95.7% 57.5%
4627913 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.73 64.0 5.65e-01 95.7% 67.4%
3685188 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.73 67.0 4.85e-01 100.0% 50.3%
5009799 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.73 62.0 5.80e-01 98.6% 76.5%
4476620 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 65.0 4.80e-01 98.6% 41.8%
4937849 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.72 63.0 5.89e-01 100.0% 78.8%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.71 62.0 4.05e-01 100.0% 21.9%
3501316 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.71 57.0 4.88e-01 89.9% 54.5%
3853184 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.71 60.0 4.53e-01 91.3% 44.5%
5039839 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 65.0 5.55e-01 100.0% 80.0%
5061235 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.70 60.0 4.15e-01 100.0% 28.2%
5041736 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.55e-01 89.9% 82.7%
4940742 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.70 59.0 5.48e-01 100.0% 75.3%
3946334 101.1.2.121 alpha arrays › HTH › HTH › winged helix domain › HTH_43 0.69 60.0 5.54e-01 100.0% 75.6%
3244040 223.1.1.108 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.69 62.0 3.73e-01 100.0% 69.9%
4538612 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.69 56.0 3.44e-01 91.3% 15.8%
4508433 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.69 59.0 3.65e-01 100.0% 16.8%
3604748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 4.18e-01 100.0% 31.6%
3548413 223.1.1.108 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.67 60.0 3.75e-01 100.0% 67.5%
3983446 101.1.2.84 alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA 0.66 55.0 4.90e-01 94.2% 63.0%
3597257 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.19e-01 97.1% 77.5%
3715676 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.43e-01 87.0% 87.8%
3947849 3609.1.1.4 alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.60 45.0 4.18e-01 87.0% 62.9%
3241453 2484.1.1.233 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.60 37.0 2.42e-01 79.7% 13.7%
3455842 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.59 45.0 3.92e-01 85.5% 97.4%
3815772 109.4.1.1580 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.59 43.0 2.52e-01 79.7% 10.8%
4997425 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.58 48.0 3.91e-01 95.7% 90.0%
4487061 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.58 52.0 3.88e-01 100.0% 87.1%
5064977 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.54e-01 89.9% 77.5%
4448557 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.57 41.0 2.87e-01 79.7% 93.2%
5045791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.73e-01 91.3% 90.7%
3236742 2484.1.1.233 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.56 34.0 2.26e-01 79.7% 13.5%
4309637 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.54 41.0 3.87e-01 84.1% 97.6%
3214850 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 44.0 2.92e-01 98.6% 82.3%
3778175 5052.1.1.1 alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.53 43.0 2.74e-01 98.6% 80.2%
3217875 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 42.0 2.78e-01 91.3% 73.1%
None 0.52 45.0 3.46e-01 100.0% 77.1%
4004108 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.52 43.0 3.02e-01 97.1% 68.0%
3249830 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 37.0 3.06e-01 75.4% 100.0%
5070158 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 39.0 2.51e-01 81.2% 74.1%
3485197 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.51 38.0 2.94e-01 79.7% 41.9%
3927291 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 44.0 2.80e-01 98.6% 52.1%
4141464 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.51 36.0 3.10e-01 75.4% 97.3%