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MT416612.2__QKE56422.1__X__00056
Bact-VirMT416612.2__QKE56422.1__X__00056
Identity
- Accession:
- MT416612 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Taxonomy
TaxID: 2736257
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-79
D2
high
residues 86-132
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x62A01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.69 | 54.0 | 5.01e-01 | 87.2% | 71.7% |
| 2eqgA01 | 4.10.240.30 | Few Secondary Structures › Irregular › CD2-Gal4 › | 0.66 | 47.0 | 4.95e-01 | 100.0% | 94.7% |
| 2d8xA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 53.0 | 4.68e-01 | 91.5% | 64.3% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 50.0 | 4.47e-01 | 91.5% | 62.5% |
| 2dj7A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.62 | 49.0 | 4.21e-01 | 91.5% | 56.2% |
| 2cuqA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.62 | 48.0 | 4.13e-01 | 89.4% | 55.0% |
| 2corA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.61 | 50.0 | 4.34e-01 | 100.0% | 58.2% |
| 2miuA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.61 | 48.0 | 3.84e-01 | 89.4% | 43.9% |
| 2lxhC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 46.0 | 4.39e-01 | 93.6% | 75.9% |
| 2m3lA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.50 | 36.0 | 3.31e-01 | 87.2% | 77.6% |
| 1go3E01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 41.0 | 3.39e-01 | 97.9% | 100.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3697191 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.78 | 52.0 | 5.84e-01 | 70.2% | 97.1% |
| 4410490 | 3961.1.1.0 ↗ | 0.74 | 50.0 | 3.87e-01 | 72.3% | 33.0% | |
| 5010496 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.71 | 48.0 | 4.91e-01 | 70.2% | 88.9% |
| 4224305 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.68 | 46.0 | 5.01e-01 | 70.2% | 97.1% |
| 3628874 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.68 | 46.0 | 5.01e-01 | 70.2% | 97.1% |
| 3230544 | 386.1.1.247 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › LIM | 0.67 | 57.0 | 4.28e-01 | 97.9% | 40.0% |
| 3530608 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.64 | 43.0 | 3.79e-01 | 70.2% | 47.1% |
| 3276747 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.63 | 42.0 | 3.20e-01 | 70.2% | 27.9% |
| 3237227 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.61 | 45.0 | 4.07e-01 | 85.1% | 77.1% |
| 3913254 | 931.1.1.7 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › VATC | 0.60 | 41.0 | 4.36e-01 | 72.3% | 100.0% |
| 4000690 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.59 | 48.0 | 4.77e-01 | 93.6% | 96.0% |
| 3232866 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 44.0 | 4.11e-01 | 93.6% | 66.2% |
| 3800676 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.57 | 48.0 | 3.87e-01 | 97.9% | 53.1% |
| 3928148 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 37.0 | 2.41e-01 | 70.2% | 14.0% |
| None | — | 0.56 | 47.0 | 3.66e-01 | 100.0% | 61.8% | |
| 3411389 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.55 | 47.0 | 3.51e-01 | 100.0% | 52.8% |
| 4857080 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.55 | 46.0 | 3.61e-01 | 100.0% | 69.6% |
| 3996642 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.55 | 43.0 | 3.39e-01 | 91.5% | 44.4% |
| 3493749 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.54 | 45.0 | 3.50e-01 | 100.0% | 70.8% |
| 3991522 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.51 | 35.0 | 3.30e-01 | 76.6% | 83.1% |
D3
high
residues 144-249
Domain cluster:
rep: MG592441.1__AUR84696.1__NVP1063O_029__00029__D2-109
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.77 | 56.0 | 5.61e-01 | 74.5% | 96.2% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 35.0 | 3.56e-01 | 88.7% | 60.6% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.54 | 48.0 | 4.24e-01 | 100.0% | 66.0% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 28.0 | 3.71e-01 | 81.1% | 100.0% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.50 | 28.0 | 2.98e-01 | 88.7% | 59.8% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.50 | 30.0 | 3.42e-01 | 84.0% | 80.5% |
| 1z9fA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 31.0 | 3.39e-01 | 86.8% | 74.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.80 | 71.0 | 6.67e-01 | 93.4% | 85.6% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.73 | 54.0 | 5.23e-01 | 76.4% | 86.1% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.54 | 48.0 | 4.24e-01 | 100.0% | 66.0% |
| 4658841 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 32.0 | 3.22e-01 | 75.5% | 60.0% |
| 3219023 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 37.0 | 3.83e-01 | 88.7% | 81.0% |