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MT451983.1__QKN87742.1__IXEL_42__00041

Bact-Vir

MT451983.1__QKN87742.1__IXEL_42__00041

Identity

Accession:
MT451983 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Neferthenavirus› Microbacterium_phage_Ixel

TaxID: 2736269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-311
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.66 58.0 4.90e-01 94.7% 92.6%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.34e-01 96.2% 90.9%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 51.0 4.21e-01 82.6% 61.5%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.77e-01 96.2% 98.6%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.64 56.0 5.17e-01 95.5% 95.8%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 44.0 3.84e-01 74.2% 60.9%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 53.0 5.08e-01 96.2% 99.4%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 53.0 5.06e-01 95.5% 94.8%
1wmxA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.60 52.0 4.81e-01 96.2% 98.3%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 53.0 4.73e-01 97.7% 92.9%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 50.0 4.47e-01 95.5% 88.0%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 51.0 4.83e-01 97.0% 96.2%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 4.78e-01 95.5% 90.9%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 4.54e-01 99.2% 86.9%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 47.0 4.73e-01 96.2% 93.3%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.19e-01 96.2% 96.4%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.67e-01 95.5% 100.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.36e-01 95.5% 93.5%
1p2zA04 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.54 46.0 4.02e-01 94.7% 99.0%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 44.0 3.63e-01 88.6% 79.0%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 47.0 4.46e-01 97.7% 96.1%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.22e-01 96.2% 88.6%
3obaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.84e-01 95.5% 83.3%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 45.0 4.09e-01 96.2% 97.1%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 45.0 4.30e-01 97.7% 92.9%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.71e-01 96.2% 78.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3837684 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.68 60.0 4.91e-01 96.2% 97.1%
3371731 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.68 60.0 4.87e-01 95.5% 92.9%
2844949 10.1.1.45 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Bact_lectin 0.67 59.0 5.05e-01 94.7% 99.5%
3821150 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.67 59.0 4.82e-01 95.5% 97.9%
3819083 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.67 59.0 4.75e-01 95.5% 92.8%
3458331 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.67 59.0 4.69e-01 95.5% 91.2%
3397758 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 50.0 4.22e-01 78.8% 59.5%
3806983 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 61.0 4.87e-01 100.0% 96.9%
3437038 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 59.0 4.70e-01 96.2% 95.8%
3336913 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 57.0 5.00e-01 91.7% 97.9%
3674173 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 60.0 4.64e-01 100.0% 86.1%
3357481 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 59.0 3.82e-01 96.2% 40.5%
3320577 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 58.0 4.66e-01 96.2% 94.6%
4382620 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.65 45.0 5.15e-01 94.7% 97.9%
3810133 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.65 59.0 4.76e-01 100.0% 98.4%
3371084 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.65 59.0 4.62e-01 100.0% 90.4%
3594807 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 56.0 4.61e-01 95.5% 99.2%
5060870 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 48.0 5.31e-01 95.5% 99.0%
3457985 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.64 57.0 4.85e-01 95.5% 93.8%
2576345 10.32.1.14 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_11 0.64 56.0 5.10e-01 95.5% 92.0%
3549937 11.1.1.351 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.63 36.0 4.40e-01 100.0% 91.3%
3885771 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 52.0 4.52e-01 97.7% 59.5%
3587758 10.1.1.94 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF25849 0.61 54.0 4.23e-01 94.7% 95.9%
3260404 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 53.0 4.90e-01 95.5% 95.3%
1209559 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 53.0 5.07e-01 96.2% 98.7%
3923896 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 54.0 4.78e-01 96.2% 82.7%
3214160 12.1.1.110 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › AMPK1_CBM 0.60 35.0 4.14e-01 95.5% 88.2%
3626422 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 52.0 4.97e-01 96.2% 100.0%
5029875 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 51.0 4.59e-01 95.5% 96.8%
3188436 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 51.0 4.82e-01 95.5% 94.4%
3865581 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 51.0 4.36e-01 100.0% 87.7%
1878 11.1.5.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.56 43.0 4.58e-01 100.0% 95.5%
3623914 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 49.0 4.41e-01 95.5% 95.0%
3608816 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 49.0 4.14e-01 96.2% 78.1%
2096157 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 49.0 4.58e-01 96.2% 96.3%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.53 34.0 4.02e-01 77.3% 100.0%
3978761 10.32.1.239 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.52 44.0 4.56e-01 96.2% 96.8%
4941877 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 4.46e-01 96.2% 96.0%
3672683 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 4.11e-01 96.2% 82.2%
1014044 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 45.0 4.13e-01 96.2% 85.3%
3514708 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 43.0 4.42e-01 93.9% 98.4%
D2 medium residues 67-128
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 42.0 3.49e-01 100.0% 45.1%
7y6oA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.43e-01 100.0% 52.8%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 45.0 4.06e-01 100.0% 85.9%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 41.0 3.70e-01 95.2% 60.7%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.08e-01 100.0% 81.7%
2n0kA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.01e-01 100.0% 86.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 39.0 2.92e-01 88.7% 76.1%
3glaA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.81e-01 100.0% 85.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584885 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.68 49.0 4.95e-01 100.0% 80.0%
3932016 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 52.0 4.42e-01 100.0% 90.0%
4333560 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.61 45.0 3.99e-01 100.0% 52.0%
3228319 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.55 46.0 4.13e-01 100.0% 90.5%
4000270 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.53 45.0 3.96e-01 100.0% 87.0%
3500665 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 46.0 4.02e-01 100.0% 81.1%
3494009 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 46.0 4.11e-01 100.0% 84.4%
3789597 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 46.0 4.02e-01 100.0% 82.1%
3578264 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 46.0 3.83e-01 100.0% 70.9%
3931219 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 46.0 3.89e-01 100.0% 73.3%
4588326 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.53e-01 100.0% 54.8%
3932718 2002.1.1.106 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.50 36.0 2.38e-01 82.3% 85.0%
3258934 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.50 42.0 2.96e-01 100.0% 67.7%