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MT457475.1__QKE60810.1__X__00005

Bact-Vir

MT457475.1__QKE60810.1__X__00005

Identity

Accession:
MT457475 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saffermanviridae› Arthrovirus› Arthronema_virus_TR020

TaxID: 2736280

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-55
PDB
Domain cluster: rep: MK448706.1__QBX15888.1__Javan221_0030__00023__D2-53
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.67e-01 98.1% 75.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.52e-01 100.0% 69.7%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.70 62.0 5.18e-01 100.0% 67.7%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 4.75e-01 100.0% 57.1%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 56.0 4.99e-01 98.1% 81.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 54.0 5.22e-01 100.0% 83.3%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 56.0 4.90e-01 100.0% 80.7%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.10e-01 100.0% 84.2%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 37.0 2.70e-01 74.1% 19.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 57.0 5.04e-01 100.0% 70.1%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 51.0 4.32e-01 94.4% 78.7%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 41.0 4.02e-01 100.0% 62.3%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 48.0 2.92e-01 90.7% 35.6%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.62e-01 83.3% 77.9%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.81e-01 85.2% 97.8%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.58 40.0 2.48e-01 75.9% 18.1%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.44e-01 72.2% 85.7%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.55e-01 83.3% 87.9%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.55e-01 81.5% 85.1%
3d8kD00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 39.0 2.47e-01 77.8% 67.1%
3l22A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 2.67e-01 92.6% 84.1%
3b42A00 3.30.450.290 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 44.0 3.40e-01 90.7% 56.3%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.15e-01 74.1% 75.2%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.68e-01 90.7% 77.8%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 43.0 2.58e-01 92.6% 69.8%
2ihyA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.49e-01 75.9% 85.5%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 45.0 3.66e-01 100.0% 76.9%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.09e-01 72.2% 83.9%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 35.0 2.95e-01 72.2% 43.1%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.51 38.0 2.86e-01 88.9% 60.8%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 32.0 3.10e-01 88.9% 47.8%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.36e-01 88.9% 79.3%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 43.0 3.91e-01 100.0% 83.3%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.83e-01 74.1% 76.1%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 34.0 2.33e-01 74.1% 80.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.63e-01 100.0% 87.1%
3914736 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 58.0 5.54e-01 96.3% 96.9%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 57.0 4.73e-01 100.0% 52.6%
4130412 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.68 49.0 4.35e-01 81.5% 89.4%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 57.0 5.07e-01 96.3% 83.5%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.59e-01 100.0% 84.4%
3254634 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.66 56.0 5.12e-01 98.1% 88.0%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.66 53.0 3.17e-01 94.4% 13.8%
158750 4357.1.1.2 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.66 56.0 4.65e-01 98.1% 64.6%
4034317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.61e-01 100.0% 85.7%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.65 53.0 5.16e-01 94.4% 100.0%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.13e-01 100.0% 82.4%
4950876 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.64 46.0 2.89e-01 90.7% 13.5%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.64 51.0 4.99e-01 92.6% 96.7%
3886750 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 53.0 5.06e-01 94.4% 96.8%
3649489 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.63 43.0 2.33e-01 72.2% 23.1%
3666159 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.63 42.0 2.38e-01 70.4% 40.3%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.62 54.0 5.43e-01 100.0% 94.5%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.62 50.0 4.93e-01 92.6% 100.0%
3668499 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.62 42.0 2.38e-01 70.4% 44.0%
3434515 109.4.1.2925 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, PPR_long, E_motif 0.61 42.0 2.35e-01 72.2% 36.5%
3424994 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.61 42.0 2.34e-01 72.2% 36.1%
3833740 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.60 43.0 2.50e-01 77.8% 47.6%
3671718 109.4.1.2659 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.58 42.0 2.34e-01 77.8% 36.5%
5044385 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 46.0 3.17e-01 94.4% 88.6%
3982462 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.57 40.0 2.58e-01 77.8% 64.0%
3659725 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.56 43.0 2.44e-01 83.3% 47.2%
3680212 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.53 42.0 2.52e-01 88.9% 21.9%
4028494 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 45.0 3.70e-01 100.0% 73.3%
4944802 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.52 40.0 2.69e-01 90.7% 37.4%
4631918 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.54e-01 83.3% 96.0%
5053840 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.50 35.0 3.25e-01 77.8% 57.1%
3225707 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.50 38.0 3.64e-01 100.0% 70.0%
5001967 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 26.0 2.74e-01 75.9% 52.0%