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MT457475.1__QKE60828.1__X__00024

Bact-Vir

MT457475.1__QKE60828.1__X__00024

Identity

Accession:
MT457475 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-46
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.71 57.0 4.41e-01 90.2% 66.7%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 54.0 3.32e-01 95.1% 31.0%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 56.0 3.34e-01 92.7% 21.8%
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.66 51.0 3.82e-01 92.7% 31.4%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 46.0 3.66e-01 78.0% 74.5%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 47.0 4.45e-01 85.4% 64.0%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.64 48.0 3.45e-01 85.4% 70.2%
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.63 44.0 3.46e-01 73.2% 87.8%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 48.0 2.96e-01 85.4% 62.0%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.63 51.0 3.51e-01 87.8% 69.3%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.63 48.0 3.17e-01 87.8% 57.0%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.63 46.0 3.32e-01 78.0% 34.1%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 3.43e-01 95.1% 37.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.62 48.0 3.19e-01 87.8% 87.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.39e-01 100.0% 35.3%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.60 44.0 3.52e-01 80.5% 91.9%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.60 46.0 3.38e-01 92.7% 41.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 4.11e-01 90.2% 80.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 44.0 3.89e-01 90.2% 63.4%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.29e-01 100.0% 57.3%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.59 43.0 2.88e-01 85.4% 36.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 48.0 4.15e-01 95.1% 78.3%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.58 41.0 3.19e-01 78.0% 80.4%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.58 43.0 4.03e-01 87.8% 87.7%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 42.0 4.00e-01 80.5% 96.1%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.74e-01 85.4% 89.2%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.06e-01 97.6% 66.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.78e-01 90.2% 64.2%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.56 42.0 3.99e-01 82.9% 98.0%
4mfzA02 3.40.630.120 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.56 45.0 3.15e-01 97.6% 34.0%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 36.0 2.32e-01 100.0% 12.4%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.40e-01 92.7% 80.6%
3foeA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 41.0 3.59e-01 87.8% 75.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.72e-01 90.2% 65.2%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.67e-01 97.6% 72.6%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.54 39.0 3.81e-01 82.9% 96.1%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.25e-01 97.6% 95.8%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 2.82e-01 97.6% 88.2%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.11e-01 97.6% 96.7%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.09e-01 95.1% 95.7%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.75e-01 95.1% 69.6%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.86e-01 97.6% 77.7%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 37.0 2.56e-01 92.7% 60.8%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 41.0 3.58e-01 95.1% 75.4%
4bjjB00 2.60.40.4370 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.26e-01 90.2% 64.7%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.17e-01 90.2% 35.5%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 39.0 3.44e-01 97.6% 82.2%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 41.0 2.97e-01 100.0% 82.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946183 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.76 59.0 4.84e-01 85.4% 80.0%
3223830 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.32e-01 80.5% 74.0%
3624739 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.73 56.0 3.57e-01 82.9% 61.1%
4072958 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.73 53.0 4.54e-01 78.0% 96.9%
3992660 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 55.0 4.05e-01 85.4% 40.9%
4306578 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.72 58.0 3.54e-01 90.2% 43.5%
3586782 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.72 57.0 4.31e-01 90.2% 60.0%
3937179 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 57.0 4.04e-01 92.7% 38.4%
3517706 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.69 50.0 3.27e-01 80.5% 60.5%
3422222 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.68 51.0 3.68e-01 82.9% 54.2%
5079208 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.68 54.0 3.37e-01 90.2% 25.7%
3211234 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 54.0 3.73e-01 87.8% 32.4%
3925688 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.68 54.0 4.28e-01 92.7% 67.8%
3219985 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.67 53.0 4.19e-01 90.2% 65.6%
3660003 5.1.10.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.67 54.0 4.40e-01 92.7% 80.0%
3581670 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 53.0 3.86e-01 92.7% 39.2%
4933326 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.67 53.0 4.26e-01 92.7% 55.7%
3380077 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 55.0 3.25e-01 100.0% 22.2%
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 51.0 3.46e-01 100.0% 22.0%
3630677 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.66 52.0 3.88e-01 92.7% 50.8%
3239831 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 53.0 3.84e-01 100.0% 37.1%
3578695 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.66 54.0 4.20e-01 92.7% 70.0%
5070757 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 54.0 4.45e-01 100.0% 97.5%
1673883 3982.1.1.1 a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.65 51.0 3.96e-01 95.1% 66.7%
3286461 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.64 52.0 4.16e-01 100.0% 84.2%
3394539 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.64 50.0 3.81e-01 92.7% 56.4%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.03e-01 100.0% 56.0%
4928472 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.64 51.0 4.23e-01 95.1% 61.3%
3191150 59.1.1.5 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.64 47.0 3.56e-01 78.0% 74.0%
3917041 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.64 50.0 3.94e-01 92.7% 64.3%
4351646 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 48.0 3.27e-01 92.7% 36.8%
3445173 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 52.0 4.62e-01 100.0% 66.2%
4978884 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.63 48.0 4.05e-01 85.4% 82.7%
3807532 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 2.84e-01 95.1% 32.2%
5055783 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.63 51.0 4.05e-01 95.1% 75.6%
3897868 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.63 48.0 3.63e-01 90.2% 53.9%
3211804 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 48.0 3.06e-01 100.0% 17.9%
3468880 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 50.0 3.00e-01 100.0% 34.4%
3357079 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.62 53.0 3.85e-01 100.0% 89.2%
5048477 109.4.1.3618 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7669 0.61 51.0 3.31e-01 100.0% 33.2%
3415548 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.61 50.0 4.04e-01 100.0% 87.8%
3355764 7579.1.1.124 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH, Hydrolase_4 0.61 50.0 3.08e-01 95.1% 47.9%
3428911 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.61 43.0 4.44e-01 85.4% 88.6%
139113 883.1.1.3 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.61 48.0 3.10e-01 95.1% 63.0%
4004760 64.1.1.5 beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.60 45.0 4.49e-01 92.7% 84.4%
3347504 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.60 49.0 4.25e-01 100.0% 58.6%
3706889 109.4.1.20 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.59 45.0 2.77e-01 92.7% 22.5%
3451552 375.1.4.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.59 46.0 4.35e-01 97.6% 98.1%
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 3.81e-01 85.4% 58.2%
5035446 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.57 43.0 4.01e-01 85.4% 94.5%
5031839 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 45.0 2.66e-01 100.0% 18.3%
4473615 513.1.1.1 a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.57 42.0 3.25e-01 80.5% 79.8%
3892575 827.1.1.1 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail 0.57 40.0 3.31e-01 73.2% 46.3%
4928594 221.1.2.20 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e 0.56 43.0 2.96e-01 87.8% 49.1%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.55 40.0 3.44e-01 82.9% 93.3%
3369320 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.55 43.0 2.43e-01 85.4% 91.4%
3683094 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.55 38.0 2.12e-01 73.2% 4.9%
4176722 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.55 45.0 3.58e-01 100.0% 93.0%
4943272 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.59e-01 82.9% 91.7%
3615214 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 43.0 2.56e-01 95.1% 41.4%
3788603 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 42.0 2.32e-01 87.8% 24.4%
3498860 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.36e-01 92.7% 25.5%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 2.98e-01 100.0% 37.6%
3488599 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 36.0 2.35e-01 82.9% 55.8%
4032637 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 36.0 3.49e-01 87.8% 90.9%
3187470 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 37.0 2.43e-01 97.6% 68.0%