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MT457552.1__QJT71755.1__TH1_071__00071

Bact-Vir

MT457552.1__QJT71755.1__TH1_071__00071

Identity

Accession:
MT457552 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Shewanella_phage_Thanatos-1

TaxID: 2734808

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-76
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11113.15 best Phage_head_chap 81.3 5.00e-23 96.4% 96.5%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 3.57e-01 75.0% 39.1%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 54.0 3.49e-01 92.9% 38.8%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.65 55.0 4.15e-01 98.2% 61.0%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.64 49.0 4.17e-01 87.5% 50.5%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 3.98e-01 78.6% 55.7%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 51.0 3.32e-01 92.9% 33.5%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 53.0 3.64e-01 100.0% 73.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 48.0 4.23e-01 87.5% 75.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 3.58e-01 89.3% 37.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 42.0 3.31e-01 73.2% 65.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.60 50.0 4.41e-01 98.2% 62.9%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 50.0 3.67e-01 100.0% 61.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.42e-01 94.6% 88.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.27e-01 94.6% 79.7%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 2.82e-01 96.4% 27.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.69e-01 89.3% 50.0%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 45.0 3.60e-01 100.0% 86.6%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 39.0 3.34e-01 83.9% 43.6%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 45.0 2.99e-01 89.3% 46.4%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 45.0 3.23e-01 91.1% 38.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.95e-01 89.3% 70.8%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 4.00e-01 100.0% 94.5%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.95e-01 92.9% 87.5%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.82e-01 94.6% 58.7%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 46.0 3.38e-01 100.0% 62.7%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.40e-01 89.3% 48.4%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 43.0 3.55e-01 87.5% 56.0%
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.25e-01 98.2% 73.9%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 46.0 3.51e-01 100.0% 71.1%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 41.0 3.08e-01 89.3% 32.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 43.0 3.30e-01 98.2% 66.2%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 42.0 3.78e-01 98.2% 93.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 36.0 2.65e-01 92.9% 23.1%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.69e-01 100.0% 60.8%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 2.93e-01 98.2% 95.3%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.52 40.0 3.38e-01 98.2% 46.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.12e-01 75.0% 53.1%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 44.0 3.89e-01 100.0% 80.0%
1rxxC01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.51 43.0 2.74e-01 98.2% 27.8%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.42e-01 100.0% 78.8%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.51 40.0 3.61e-01 100.0% 60.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 3.36e-01 78.6% 57.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 41.0 3.37e-01 100.0% 77.0%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.38e-01 78.6% 82.2%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.50 40.0 3.22e-01 98.2% 97.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3330406 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 50.0 4.96e-01 80.4% 96.7%
4645759 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.66 55.0 3.90e-01 100.0% 56.4%
3166879 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 50.0 4.80e-01 100.0% 73.8%
4955625 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.64 55.0 3.90e-01 96.4% 37.1%
3593024 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.64 51.0 4.10e-01 91.1% 43.5%
3237442 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 51.0 4.25e-01 89.3% 56.0%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 50.0 4.30e-01 89.3% 61.1%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.63 54.0 4.69e-01 94.6% 72.9%
1115584 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.63 52.0 3.80e-01 100.0% 59.2%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 50.0 4.20e-01 89.3% 55.0%
3284738 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.63 53.0 3.83e-01 96.4% 38.2%
5080814 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.62 43.0 4.09e-01 75.0% 67.1%
5056905 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.61 48.0 4.20e-01 89.3% 65.6%
4665960 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.61 50.0 3.58e-01 91.1% 36.4%
4123449 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.60 51.0 4.55e-01 100.0% 68.2%
4098502 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.58 50.0 3.52e-01 100.0% 53.2%
4002566 109.4.1.574 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p 0.58 46.0 2.94e-01 87.5% 22.1%
5018480 1104.1.1.0 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.58 47.0 3.39e-01 94.6% 61.1%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 45.0 4.34e-01 87.5% 76.9%
3531310 109.4.1.574 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p 0.56 44.0 2.91e-01 85.7% 26.0%
4592880 109.4.1.574 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p 0.56 44.0 2.70e-01 85.7% 17.4%
3658323 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.56 48.0 3.96e-01 98.2% 61.0%
4095038 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.56 44.0 2.53e-01 85.7% 10.7%
3578264 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 39.0 3.16e-01 75.0% 60.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.55 44.0 4.07e-01 94.6% 68.0%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.55 45.0 3.10e-01 94.6% 24.7%
3595489 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 39.0 3.84e-01 78.6% 96.7%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.95e-01 94.6% 65.3%
3183690 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.33e-01 94.6% 91.3%
4304407 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 45.0 3.44e-01 94.6% 78.5%
4285674 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.54 40.0 3.57e-01 85.7% 57.8%
3281159 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.53 40.0 2.98e-01 94.6% 29.1%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.53 40.0 3.69e-01 94.6% 61.3%
3496292 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 4.11e-01 89.3% 85.5%
4507316 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.53 44.0 3.53e-01 94.6% 88.7%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.53 44.0 3.67e-01 98.2% 55.2%
3612666 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.17e-01 85.7% 86.9%
3210750 223.2.1.48 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 0.52 43.0 3.20e-01 91.1% 75.3%
4046343 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.52 38.0 3.42e-01 89.3% 52.2%
3516854 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.48e-01 94.6% 92.2%
4619347 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.35e-01 91.1% 87.0%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.84e-01 94.6% 78.6%
3882652 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.08e-01 87.5% 55.4%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.51 37.0 3.70e-01 80.4% 75.9%
4298591 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.50 37.0 2.88e-01 83.9% 75.9%