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MT457552.1__QJT71823.1__TH1_141__00139

Bact-Vir

MT457552.1__QJT71823.1__TH1_141__00139

Identity

Accession:
MT457552 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Shewanella_phage_Thanatos-1

TaxID: 2734808

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-151
PDB
Domain cluster: rep: KY971610.1__ASD52172.1__PspYZU05_220__00220__D4-142
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.70 27.0 3.43e-01 92.7% 55.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.63 31.0 3.47e-01 100.0% 58.8%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 32.0 3.85e-01 85.4% 80.2%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.55 37.0 4.31e-01 80.1% 99.0%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 31.0 3.57e-01 88.1% 73.9%
2qptA01 1.10.268.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › 0.55 33.0 3.43e-01 85.4% 61.0%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 32.0 3.71e-01 85.4% 83.5%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.84e-01 81.5% 90.1%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.52 37.0 3.80e-01 100.0% 74.3%
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.52 31.0 3.07e-01 70.2% 52.4%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.67e-01 80.1% 93.9%
6ko8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 39.0 3.65e-01 78.1% 70.8%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.51 35.0 3.79e-01 82.1% 84.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3803147 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.71 33.0 3.32e-01 91.4% 44.7%
3852543 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.63 32.0 3.69e-01 100.0% 65.5%
3441901 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.62 29.0 3.90e-01 100.0% 83.7%
3458091 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.62 29.0 3.70e-01 100.0% 75.3%
3733145 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 33.0 3.44e-01 100.0% 53.6%
3685745 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.62 28.0 3.24e-01 100.0% 57.3%
3230496 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.57 30.0 3.81e-01 100.0% 87.1%
3367692 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.56 48.0 4.94e-01 98.7% 98.6%
3353264 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.55 50.0 4.86e-01 99.3% 100.0%
5014336 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 42.0 4.33e-01 86.1% 84.1%
3880173 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 34.0 3.55e-01 80.1% 65.5%
5061118 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 41.0 4.54e-01 89.4% 98.4%
3859301 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 34.0 3.54e-01 80.8% 65.5%
3640724 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.96e-01 98.0% 93.5%
3520863 109.4.1.472 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like 0.52 43.0 3.29e-01 88.1% 92.5%
3783218 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.52 37.0 2.58e-01 72.8% 86.5%
4930117 1075.5.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt 0.51 41.0 3.74e-01 86.8% 86.2%
3371169 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 3.97e-01 100.0% 70.8%
3163932 601.4.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PilJ 0.50 34.0 3.88e-01 80.1% 97.1%
3264100 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.50 39.0 3.40e-01 86.8% 53.2%