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MT457552.1__QJT71826.1__TH1_144__00142

Bact-Vir

MT457552.1__QJT71826.1__TH1_144__00142

Identity

Accession:
MT457552 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Shewanella_phage_Thanatos-1

TaxID: 2734808

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-30_45-127
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 47.0 4.46e-01 94.3% 65.0%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 44.0 4.10e-01 71.4% 91.7%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.62 43.0 4.07e-01 71.4% 82.8%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 47.0 4.21e-01 97.1% 57.1%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 37.0 3.98e-01 90.5% 71.6%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 4.40e-01 95.2% 69.1%
2yv9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 50.0 4.60e-01 95.2% 69.4%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 40.0 4.00e-01 93.3% 65.7%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.60 41.0 3.54e-01 70.5% 70.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 42.0 4.17e-01 92.4% 69.6%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.59 45.0 3.72e-01 90.5% 46.4%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.58 38.0 4.05e-01 93.3% 77.3%
5vjcA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 40.0 2.99e-01 98.1% 28.2%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 42.0 3.50e-01 77.1% 50.5%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 44.0 4.16e-01 100.0% 66.4%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 43.0 4.20e-01 93.3% 72.6%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 49.0 4.69e-01 96.2% 82.0%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.56 46.0 4.56e-01 88.6% 80.5%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 4.26e-01 93.3% 80.2%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.56 37.0 3.70e-01 81.0% 64.2%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 4.16e-01 97.1% 77.1%
2dwkA00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.55 48.0 4.15e-01 94.3% 90.7%
4wnfA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 3.43e-01 99.0% 36.9%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 46.0 4.43e-01 88.6% 78.3%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.54 45.0 4.00e-01 89.5% 90.1%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.54 38.0 4.25e-01 95.2% 98.7%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 44.0 4.29e-01 88.6% 91.5%
2nwbA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 3.62e-01 97.1% 92.0%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 42.0 3.09e-01 97.1% 29.3%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 45.0 3.78e-01 100.0% 58.4%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.52 37.0 3.23e-01 74.3% 74.4%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.52 42.0 4.03e-01 86.7% 79.8%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.51 46.0 4.19e-01 96.2% 94.1%
2o8hA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.51 44.0 3.24e-01 99.0% 72.0%
3doeB00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.51 37.0 3.65e-01 77.1% 83.3%
1st6A01 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.50 42.0 3.13e-01 89.5% 42.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031241 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.70 49.0 5.54e-01 99.0% 95.0%
3892270 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.66 50.0 3.98e-01 79.0% 72.9%
5073131 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.61 42.0 4.08e-01 96.2% 61.7%
3998525 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.61 41.0 3.42e-01 97.1% 39.4%
3969234 109.1.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_3 0.60 46.0 3.69e-01 95.2% 41.9%
138422 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.60 46.0 4.36e-01 95.2% 67.5%
3931179 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.59 41.0 4.46e-01 86.7% 89.4%
4038749 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 45.0 4.37e-01 97.1% 73.0%
148583 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.58 45.0 4.32e-01 96.2% 71.7%
3597731 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.58 46.0 4.54e-01 91.4% 78.2%
3169705 601.4.1.36 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › Aip3p_Bud6_N 0.58 48.0 4.48e-01 87.6% 73.8%
4069906 604.12.1.108 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CRPA 0.58 44.0 4.21e-01 100.0% 70.0%
3964502 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.57 44.0 4.35e-01 97.1% 77.3%
4338483 1076.1.1.4 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease 0.57 49.0 3.85e-01 97.1% 61.4%
4220561 601.1.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C 0.56 47.0 4.41e-01 88.6% 78.3%
3422799 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.56 44.0 4.14e-01 97.1% 69.6%
3802077 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.55 49.0 3.40e-01 100.0% 72.8%
3725031 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 47.0 4.04e-01 90.5% 67.5%
3728304 604.12.1.24 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6604 0.55 46.0 4.73e-01 97.1% 94.0%
4009779 601.4.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH 0.55 43.0 3.92e-01 81.9% 70.4%
3926555 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.55 45.0 3.04e-01 90.5% 22.9%
4337092 3291.1.1.5 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C 0.54 46.0 4.16e-01 90.5% 87.7%
3594801 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.53e-01 90.5% 89.1%
1157316 4229.1.1.3 ↗ alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › PrnB 0.54 47.0 3.73e-01 96.2% 72.7%
4040220 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.53 42.0 3.30e-01 84.8% 86.2%
3223128 109.4.1.63 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 0.53 46.0 3.57e-01 94.3% 59.6%
3677344 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.52 46.0 3.18e-01 100.0% 70.5%
4290892 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.52 43.0 3.21e-01 89.5% 54.7%
3233827 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.52 41.0 3.97e-01 84.8% 88.3%
3423539 109.4.1.153 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCF 0.52 37.0 3.07e-01 100.0% 38.6%
4960914 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.52 36.0 2.64e-01 71.4% 33.7%
4121455 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.33e-01 100.0% 37.1%
3590073 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 37.0 4.04e-01 78.1% 91.8%
3176648 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.52 46.0 3.70e-01 97.1% 83.0%
4979325 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 37.0 3.86e-01 90.5% 84.2%
3239357 192.29.1.51 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM138 0.51 42.0 3.84e-01 88.6% 84.3%
3730144 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.51 43.0 3.63e-01 92.4% 57.2%
3937142 601.54.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 0.51 45.0 3.76e-01 94.3% 62.9%
3172094 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 44.0 3.92e-01 96.2% 82.0%
D2 medium residues 131-187
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pxyB03 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.70 49.0 3.81e-01 91.2% 35.6%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 43.0 3.81e-01 78.9% 78.2%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 52.0 3.74e-01 100.0% 90.9%
6pe0E01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 33.0 3.39e-01 91.2% 56.6%
1t9hA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.54 45.0 4.31e-01 98.2% 92.6%
1urjA02 1.20.190.40 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain 0.51 43.0 3.09e-01 100.0% 46.2%