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MT457552.1__QJT71832.1__TH1_150__00148

Bact-Vir

MT457552.1__QJT71832.1__TH1_150__00148

Identity

Accession:
MT457552 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Shewanella_phage_Thanatos-1

TaxID: 2734808

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-116
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 43.0 4.01e-01 100.0% 54.4%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.60 32.0 3.78e-01 77.6% 74.1%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 4.31e-01 100.0% 58.5%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 42.0 3.72e-01 98.3% 51.7%
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 49.0 4.17e-01 100.0% 57.7%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 37.0 3.48e-01 86.2% 53.5%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 39.0 3.67e-01 100.0% 56.4%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 50.0 4.18e-01 100.0% 58.2%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.56 40.0 4.00e-01 100.0% 70.7%
2genA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 49.0 4.20e-01 100.0% 60.1%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.55 49.0 3.81e-01 99.1% 77.6%
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.55 42.0 2.90e-01 84.5% 64.5%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 40.0 4.09e-01 100.0% 81.2%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 40.0 3.61e-01 100.0% 57.3%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.51 45.0 3.84e-01 100.0% 82.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.51 37.0 4.09e-01 87.1% 93.6%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.51 39.0 3.74e-01 94.0% 69.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.50 36.0 3.57e-01 83.6% 69.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029918 4984.1.1.0 ↗ alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.62 54.0 4.69e-01 94.0% 90.3%
3281517 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.62 52.0 4.46e-01 100.0% 57.8%
3587934 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.61 55.0 4.40e-01 98.3% 57.5%
3877909 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 33.0 3.91e-01 94.0% 85.3%
4565834 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.57 42.0 3.92e-01 100.0% 60.7%
3729709 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.57 51.0 3.98e-01 99.1% 81.6%
3417703 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.56 37.0 3.30e-01 93.1% 46.1%
3486497 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 40.0 3.86e-01 98.3% 65.4%
3973681 5051.1.1.0 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.55 43.0 2.89e-01 86.2% 55.0%
3628698 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 42.0 4.25e-01 97.4% 85.2%
3947762 191.1.1.29 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_27 0.52 48.0 4.40e-01 100.0% 78.4%
3524385 3881.1.1.2 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › Codanin-1_C 0.51 43.0 3.83e-01 88.8% 75.0%
5023376 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 39.0 3.38e-01 100.0% 50.8%
3413921 109.4.1.496 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 0.51 43.0 2.90e-01 100.0% 22.7%
3251843 601.1.2.5 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TLN1-like_RS 0.50 39.0 3.22e-01 95.7% 44.1%
2625677 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.50 40.0 4.15e-01 87.9% 89.2%
3568681 5054.1.1.17 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 0.50 42.0 3.31e-01 92.2% 80.0%
4476660 192.8.1.478 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BAG6 0.50 35.0 3.49e-01 73.3% 92.0%
D2 medium residues 117-177
PDB
Domain cluster: rep: MT457552.1__QJT71826.1__TH1_144__00142__D131-187