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MT491207.1__QLI49449.1__vBPaeMUSP18_08__00008

Bact-Vir

MT491207.1__QLI49449.1__vBPaeMUSP18_08__00008

Identity

Accession:
MT491207 ↗
Kingdom:
phage

Quality

95.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PaeM_USP_18

TaxID: 2743937

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 42.0 4.56e-01 97.9% 75.0%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.66 49.0 5.08e-01 100.0% 82.2%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 43.0 3.08e-01 70.5% 36.5%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 39.0 4.10e-01 97.9% 74.4%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 37.0 3.29e-01 92.6% 44.4%
1xkoB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.57 51.0 4.28e-01 96.8% 73.0%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 4.27e-01 97.9% 77.2%
3hzhB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.55 48.0 4.09e-01 94.7% 74.0%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.55 45.0 4.62e-01 94.7% 92.3%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 4.23e-01 97.9% 71.1%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 46.0 4.40e-01 98.9% 79.6%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 37.0 3.69e-01 97.9% 68.4%
2z7bA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 43.0 3.28e-01 92.6% 94.5%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 4.18e-01 100.0% 77.6%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 45.0 4.29e-01 100.0% 85.1%
2iw2A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 43.0 3.51e-01 92.6% 98.9%
3zrpA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 4.02e-01 91.6% 100.0%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.51 39.0 3.43e-01 97.9% 53.3%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 44.0 4.18e-01 100.0% 82.1%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.50 41.0 3.77e-01 91.6% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3369393 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.65 44.0 4.51e-01 100.0% 72.2%
3727312 192.2.1.6 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_3 0.64 34.0 3.30e-01 100.0% 43.6%
3591527 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.63 42.0 4.43e-01 97.9% 76.5%
3826288 205.1.1.19 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.61 35.0 4.02e-01 96.8% 77.1%
5065755 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 44.0 3.78e-01 100.0% 52.0%
3345073 298.3.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.56 49.0 4.22e-01 97.9% 89.7%
4955808 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.55 44.0 3.28e-01 97.9% 33.3%
5045979 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.55 37.0 2.76e-01 70.5% 40.4%
4442466 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.54 38.0 3.59e-01 100.0% 60.0%
3496992 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.54 41.0 3.75e-01 83.2% 65.9%
3655823 109.4.1.602 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 0.53 40.0 2.63e-01 82.1% 31.0%
3945028 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 47.0 4.45e-01 100.0% 84.3%
3939107 898.1.1.0 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.52 42.0 3.91e-01 89.5% 97.6%
5044890 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.52 42.0 3.91e-01 88.4% 100.0%
4600900 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 36.0 3.53e-01 72.6% 73.3%
4961625 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 46.0 4.37e-01 100.0% 82.6%
3671992 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.51 45.0 4.05e-01 100.0% 97.8%
3790774 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 4.00e-01 92.6% 82.5%
4948079 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.51 40.0 3.78e-01 88.4% 100.0%
4934848 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.51 39.0 3.70e-01 84.2% 100.0%
3388482 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.50 39.0 3.71e-01 84.2% 100.0%
5036818 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.50 37.0 3.48e-01 80.0% 90.4%
4977329 281.1.1.2 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › ThiP_synth 0.50 44.0 3.56e-01 98.9% 94.3%
4936988 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.50 38.0 3.66e-01 100.0% 69.0%
3231531 5050.1.1.22 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like 0.50 44.0 3.19e-01 100.0% 90.2%
5063962 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.50 39.0 3.68e-01 100.0% 68.7%