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MT491208.1__QLI49522.1__vBPaeMUSP25_61__00062

Bact-Vir

MT491208.1__QLI49522.1__vBPaeMUSP25_61__00062

Identity

Accession:
MT491208 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PaeM_USP_25

TaxID: 2743939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.72 60.0 4.17e-01 95.3% 29.1%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.72e-01 93.8% 80.0%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 62.0 4.67e-01 95.3% 52.0%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 59.0 4.55e-01 95.3% 50.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.46e-01 96.9% 77.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.58e-01 96.9% 93.8%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.47e-01 95.3% 92.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 3.62e-01 89.1% 66.7%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 56.0 5.33e-01 96.9% 85.1%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 50.0 3.88e-01 89.1% 76.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 50.0 3.94e-01 96.9% 51.7%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.76e-01 95.3% 79.3%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 49.0 3.92e-01 96.9% 51.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 52.0 3.87e-01 100.0% 91.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.33e-01 96.9% 82.3%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 44.0 3.24e-01 81.2% 46.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.12e-01 96.9% 68.8%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 39.0 4.19e-01 82.8% 90.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.72e-01 89.1% 81.9%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 37.0 3.03e-01 79.7% 33.6%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.16e-01 84.4% 33.8%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.54e-01 89.1% 73.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.56e-01 98.4% 82.6%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 3.66e-01 82.8% 89.5%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 48.0 4.25e-01 100.0% 93.0%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.33e-01 90.6% 84.8%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.52e-01 89.1% 84.7%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.63e-01 89.1% 87.1%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 42.0 3.30e-01 84.4% 48.7%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.56 44.0 3.69e-01 89.1% 78.8%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.26e-01 93.8% 91.2%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.52e-01 98.4% 83.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.51e-01 90.6% 88.7%
1a7sA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 3.69e-01 89.1% 78.6%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.49e-01 84.4% 74.8%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.52e-01 87.5% 82.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.64e-01 92.2% 78.5%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.54 41.0 3.58e-01 93.8% 52.4%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.54 44.0 3.39e-01 96.9% 88.3%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 43.0 3.45e-01 93.8% 47.9%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.52e-01 95.3% 55.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.76e-01 95.3% 86.4%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.41e-01 100.0% 88.7%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 41.0 3.30e-01 95.3% 94.6%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.86e-01 81.2% 31.4%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.50e-01 92.2% 24.2%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 37.0 2.91e-01 84.4% 70.3%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.33e-01 96.9% 54.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.83 63.0 6.51e-01 95.3% 85.0%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 66.0 6.41e-01 95.3% 80.0%
3201878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 5.22e-01 95.3% 50.7%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.75 66.0 6.46e-01 95.3% 87.1%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 65.0 5.95e-01 95.3% 73.8%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.19e-01 95.3% 59.2%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.23e-01 95.3% 57.4%
3970000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 63.0 5.46e-01 95.3% 65.0%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 63.0 5.13e-01 95.3% 52.2%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.73 61.0 5.43e-01 95.3% 64.4%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 61.0 5.47e-01 95.3% 67.1%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 63.0 4.52e-01 95.3% 71.4%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 56.0 5.50e-01 95.3% 78.6%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 61.0 4.57e-01 95.3% 47.1%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 61.0 5.50e-01 95.3% 70.6%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 56.0 3.77e-01 95.3% 23.7%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.66 55.0 4.06e-01 95.3% 43.9%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.66 48.0 4.81e-01 93.8% 76.9%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.98e-01 95.3% 66.7%
4174957 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 54.0 3.90e-01 95.3% 39.0%
4965742 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.65 46.0 3.52e-01 82.8% 32.0%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 52.0 3.79e-01 89.1% 48.3%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.64 54.0 4.85e-01 95.3% 86.7%
3476907 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 54.0 3.45e-01 96.9% 33.4%
None — 0.63 52.0 3.91e-01 95.3% 57.1%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.63 53.0 4.70e-01 95.3% 82.1%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.62 52.0 4.80e-01 95.3% 91.8%
3625002 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 54.0 3.48e-01 96.9% 23.4%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.82e-01 95.3% 80.0%
3707138 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 49.0 3.60e-01 90.6% 79.7%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.60 52.0 3.87e-01 100.0% 91.9%
5080798 4.17.1.0 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.59 50.0 4.76e-01 95.3% 82.7%
3787756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 46.0 3.57e-01 89.1% 82.3%
3907200 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.68e-01 89.1% 12.4%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.53e-01 95.3% 77.4%
3286425 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.05e-01 90.6% 61.1%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 49.0 3.81e-01 100.0% 54.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 48.0 4.42e-01 95.3% 76.5%
3212847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 45.0 3.22e-01 89.1% 39.0%
3785886 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.57 44.0 3.23e-01 89.1% 75.1%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 48.0 4.49e-01 95.3% 81.2%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 44.0 4.41e-01 96.9% 87.7%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.39e-01 95.3% 85.1%
4101476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.33e-01 95.3% 80.0%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.56 46.0 3.62e-01 100.0% 53.8%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.83e-01 95.3% 77.4%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.71e-01 95.3% 81.6%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 45.0 3.77e-01 96.9% 61.7%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.71e-01 95.3% 71.5%
3619357 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.47e-01 95.3% 70.3%
3471641 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.66e-01 95.3% 76.0%
2659003 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.54 40.0 3.24e-01 82.8% 47.4%
3620222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.70e-01 95.3% 76.7%
3283078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 42.0 3.35e-01 92.2% 87.2%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.60e-01 95.3% 74.8%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.64e-01 95.3% 84.2%
3647962 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 43.0 3.34e-01 92.2% 54.5%
2841855 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.52 40.0 3.18e-01 87.5% 91.3%
3445177 9.1.1.10 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE 0.52 40.0 2.99e-01 89.1% 77.4%
3515884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.60e-01 96.9% 76.7%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.58e-01 95.3% 82.6%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.98e-01 96.9% 85.7%
3213025 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 41.0 3.08e-01 95.3% 85.3%
3809120 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 41.0 3.31e-01 90.6% 49.2%