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MT498037.1__QKY78549.1__SEA_DRYAD_11__00011

Bact-Vir

MT498037.1__QKY78549.1__SEA_DRYAD_11__00011

Identity

Accession:
MT498037 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_Dryad

TaxID: 2743933

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 61-123
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jjiE01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 50.0 4.00e-01 71.4% 84.1%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.63 44.0 3.83e-01 74.6% 87.1%
4bjmC00 1.20.58.1680 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 3.03e-01 74.6% 90.7%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.60 44.0 4.27e-01 79.4% 100.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 38.0 3.35e-01 73.0% 74.7%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.55 41.0 4.07e-01 96.8% 76.9%
2yukA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 43.0 3.85e-01 87.3% 62.2%
5hpfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 2.92e-01 82.5% 71.4%
2q83A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 36.0 2.58e-01 79.4% 60.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3440159 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 63.0 5.57e-01 73.0% 70.6%
3528983 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.89 55.0 6.80e-01 71.4% 100.0%
3252664 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.88 61.0 6.47e-01 71.4% 81.8%
3252602 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.87 60.0 3.37e-01 71.4% 7.0%
3880607 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.86 60.0 6.46e-01 73.0% 83.6%
3440160 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 59.0 6.90e-01 71.4% 100.0%
3614917 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.85 56.0 5.97e-01 79.4% 78.2%
3172891 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.84 60.0 6.74e-01 74.6% 94.0%
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.83 62.0 6.57e-01 77.8% 100.0%
3716587 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 57.0 6.12e-01 71.4% 87.3%
3125 130.1.1.14 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › YqbF_HeH 0.83 57.0 6.09e-01 71.4% 83.3%
3741728 130.1.1.19 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › MUG2_C 0.82 62.0 5.04e-01 79.4% 62.7%
3838872 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.82 59.0 6.24e-01 74.6% 90.9%
3271283 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.81 58.0 5.95e-01 74.6% 81.7%
5049323 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.81 56.0 4.03e-01 71.4% 31.4%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 56.0 6.20e-01 71.4% 90.0%
3568558 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 57.0 5.92e-01 74.6% 81.7%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.75 53.0 5.63e-01 73.0% 96.4%
3445646 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.59 48.0 3.19e-01 93.7% 43.7%
4948166 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.57 36.0 3.83e-01 76.2% 72.7%
4229570 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.56 41.0 4.13e-01 77.8% 84.6%
3861849 601.1.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.56 45.0 2.93e-01 95.2% 68.8%
4993942 3009.1.1.14 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DUF2240 0.54 37.0 4.04e-01 71.4% 90.0%
3271786 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.53 45.0 3.35e-01 96.8% 51.8%
3870506 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 36.0 3.05e-01 76.2% 44.5%