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MT498043.1__QKY78999.1__Jinkies_51__00051

Bact-Vir

MT498043.1__QKY78999.1__Jinkies_51__00051

Identity

Accession:
MT498043 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-128
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 4.93e-01 87.7% 55.2%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 50.0 3.22e-01 87.7% 16.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 5.72e-01 87.7% 82.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.73 50.0 3.83e-01 82.5% 32.5%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.35e-01 86.0% 71.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.10e-01 84.2% 66.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.16e-01 86.0% 66.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 4.87e-01 86.0% 58.7%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.34e-01 86.0% 76.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.69e-01 80.7% 56.2%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 45.0 4.97e-01 77.2% 84.4%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.65e-01 93.0% 54.4%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 5.34e-01 84.2% 83.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 5.10e-01 84.2% 80.4%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.67 52.0 5.29e-01 98.2% 89.3%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.54e-01 86.0% 76.8%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.58e-01 98.2% 58.4%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.60e-01 86.0% 82.9%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.64e-01 94.7% 61.4%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.46e-01 98.2% 57.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.52e-01 86.0% 63.2%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.01e-01 93.0% 40.3%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.63 41.0 3.99e-01 75.4% 58.5%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.26e-01 86.0% 70.8%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.62 48.0 3.80e-01 87.7% 38.9%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.73e-01 100.0% 75.0%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 48.0 3.39e-01 94.7% 27.8%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.29e-01 94.7% 75.6%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 40.0 2.73e-01 77.2% 60.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 4.12e-01 93.0% 83.6%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 42.0 4.42e-01 82.5% 98.0%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.54 46.0 4.57e-01 100.0% 95.0%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 3.84e-01 93.0% 60.2%
1oqyA03 1.10.10.540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain 0.53 40.0 4.00e-01 84.2% 86.2%
2o35A00 1.10.3340.10 Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like 0.51 39.0 3.70e-01 94.7% 79.7%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 39.0 3.08e-01 93.0% 47.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 4.58e-01 80.7% 48.2%
3972272 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.75 58.0 5.26e-01 86.0% 62.7%
5041148 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 52.0 4.89e-01 86.0% 60.0%
4030763 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.74 57.0 5.45e-01 86.0% 72.3%
4321251 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 57.0 5.12e-01 86.0% 60.8%
4010691 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 56.0 5.76e-01 86.0% 85.5%
3944309 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 55.0 5.82e-01 84.2% 92.0%
4008147 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 58.0 5.56e-01 87.7% 75.4%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 58.0 5.59e-01 86.0% 78.5%
3941764 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 58.0 5.60e-01 86.0% 78.5%
3290024 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 56.0 5.01e-01 86.0% 58.7%
4937081 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 54.0 5.23e-01 87.7% 70.8%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 55.0 5.31e-01 87.7% 72.3%
3718418 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 4.66e-01 82.5% 52.9%
3971414 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 56.0 5.55e-01 86.0% 80.0%
3968864 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.71 55.0 4.99e-01 84.2% 62.7%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.57e-01 93.0% 81.7%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 56.0 5.58e-01 86.0% 85.0%
3972270 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 53.0 4.98e-01 87.7% 65.7%
3597464 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 52.0 5.19e-01 82.5% 75.0%
3974013 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 54.0 5.33e-01 86.0% 78.3%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 56.0 5.22e-01 86.0% 72.9%
4661582 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 54.0 4.36e-01 86.0% 43.6%
3166394 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.70 56.0 4.68e-01 94.7% 51.0%
3973662 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 4.52e-01 86.0% 52.0%
3279330 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.69 51.0 4.67e-01 84.2% 60.0%
3941460 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 55.0 5.25e-01 86.0% 78.5%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.69 51.0 4.79e-01 84.2% 64.3%
3976506 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 52.0 4.81e-01 84.2% 70.7%
3976958 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.68 53.0 5.56e-01 86.0% 100.0%
4418437 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.68 56.0 5.37e-01 93.0% 80.0%
4368209 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.67 53.0 5.55e-01 86.0% 100.0%
3984815 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.67 51.0 5.24e-01 86.0% 89.1%
4544741 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.67 51.0 5.11e-01 86.0% 83.3%
3979732 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 5.24e-01 93.0% 80.0%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 4.76e-01 82.5% 72.9%
4992089 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.66 52.0 4.24e-01 87.7% 72.7%
3266230 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.65 43.0 4.26e-01 77.2% 65.0%
5029463 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.59e-01 73.7% 89.1%
2441957 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 50.0 4.44e-01 94.7% 60.0%
5074939 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 46.0 4.68e-01 91.2% 83.6%
3741635 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.55 44.0 3.69e-01 89.5% 57.0%
3447742 102.1.1.84 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Calmod_bind_M 0.54 39.0 3.76e-01 80.7% 91.4%
D2 medium residues 12-63
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 54.0 4.57e-01 84.6% 75.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 48.0 3.03e-01 80.8% 85.2%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 51.0 4.41e-01 86.5% 57.0%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 51.0 4.09e-01 100.0% 69.2%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.59 48.0 3.07e-01 86.5% 45.2%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 48.0 3.04e-01 98.1% 24.3%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 50.0 4.23e-01 100.0% 76.7%
4lvuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 47.0 3.14e-01 100.0% 58.7%
2x41A02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.56 45.0 2.96e-01 96.2% 35.3%
3ijdA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.55 47.0 2.89e-01 92.3% 29.0%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 48.0 3.05e-01 96.2% 35.7%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.51 43.0 4.09e-01 88.5% 80.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3730630 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.70 61.0 3.65e-01 100.0% 25.0%
3209221 3924.1.1.1 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.69 61.0 3.68e-01 100.0% 28.2%
3199068 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.67 59.0 3.50e-01 100.0% 24.3%
3727717 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.67 56.0 3.40e-01 100.0% 25.1%
4192313 106.1.1.2 alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.67 52.0 3.59e-01 82.7% 67.3%
3590548 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 52.0 3.40e-01 84.6% 19.6%
3693450 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.65 57.0 3.40e-01 100.0% 24.5%
3471868 6171.1.1.1 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.62 48.0 3.96e-01 96.2% 89.6%
3739404 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 50.0 3.20e-01 100.0% 28.6%
5010604 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.55 49.0 3.13e-01 100.0% 29.2%
3821378 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.53 45.0 2.73e-01 92.3% 15.5%