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MT498043.1__QPK40190.1__SEA_JINKIES_59__00059
Bact-VirMT498043.1__QPK40190.1__SEA_JINKIES_59__00059
Identity
- Accession:
- MT498043 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Berryhillviridae›
Jinkiesvirus›
Arthrobacter_phage_Jinkies
TaxID: 2743903
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-60
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.68 | 49.0 | 3.42e-01 | 78.0% | 92.5% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.66 | 47.0 | 3.38e-01 | 76.0% | 56.5% |
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 36.0 | 3.91e-01 | 82.0% | 62.8% |
| 1pn9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 46.0 | 3.48e-01 | 80.0% | 43.8% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 42.0 | 3.73e-01 | 70.0% | 81.3% |
| 2e5vA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.60 | 47.0 | 3.78e-01 | 86.0% | 62.9% |
| 3eabG00 | 6.10.250.440 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 42.0 | 4.62e-01 | 80.0% | 92.5% |
| 1rqgA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 42.0 | 2.89e-01 | 76.0% | 70.9% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.57 | 41.0 | 3.75e-01 | 76.0% | 64.6% |
| 4qhpA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.57 | 48.0 | 2.92e-01 | 100.0% | 14.4% |
| 4evqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 48.0 | 3.24e-01 | 96.0% | 80.7% |
| 2lf3A00 | 1.20.1280.220 | Mainly Alpha › Up-down Bundle › Monooxygenase › Effector protein HopAB, BAK1-interacting domain | 0.57 | 43.0 | 3.50e-01 | 86.0% | 78.1% |
| 4f3fC00 | 1.20.970.40 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.57 | 38.0 | 3.61e-01 | 70.0% | 71.2% |
| 1gs5A00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.56 | 49.0 | 3.12e-01 | 100.0% | 48.1% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.55 | 43.0 | 3.59e-01 | 100.0% | 62.4% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 46.0 | 2.90e-01 | 98.0% | 54.9% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 45.0 | 2.75e-01 | 96.0% | 61.2% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.54 | 44.0 | 3.45e-01 | 92.0% | 89.0% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.54 | 45.0 | 3.36e-01 | 100.0% | 73.6% |
| 2x41A02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.54 | 47.0 | 2.93e-01 | 98.0% | 20.9% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 40.0 | 2.82e-01 | 90.0% | 38.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.53 | 48.0 | 3.91e-01 | 100.0% | 61.1% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 40.0 | 3.86e-01 | 98.0% | 80.0% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 41.0 | 3.82e-01 | 86.0% | 88.5% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.50 | 37.0 | 3.11e-01 | 80.0% | 54.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 55.0 | 5.07e-01 | 80.0% | 89.2% |
| 3315282 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.72 | 49.0 | 2.97e-01 | 74.0% | 13.2% |
| 4582416 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.70 | 49.0 | 3.36e-01 | 76.0% | 86.5% |
| 3356212 | 109.4.1.1279 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 | 0.69 | 50.0 | 3.17e-01 | 78.0% | 20.4% |
| 3920718 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.68 | 51.0 | 3.21e-01 | 80.0% | 19.6% |
| 3012514 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.68 | 48.0 | 3.15e-01 | 76.0% | 88.0% |
| 3671073 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.68 | 47.0 | 2.72e-01 | 76.0% | 9.1% |
| 3458513 | 109.4.1.1279 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 | 0.68 | 50.0 | 3.00e-01 | 82.0% | 13.3% |
| 3647894 | 109.4.1.775 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 53.0 | 3.62e-01 | 88.0% | 30.8% |
| 3642758 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.67 | 49.0 | 3.50e-01 | 80.0% | 66.9% |
| 3641429 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.67 | 52.0 | 3.28e-01 | 88.0% | 19.7% |
| 3640422 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.67 | 54.0 | 3.31e-01 | 92.0% | 56.3% |
| 3372660 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.66 | 47.0 | 2.91e-01 | 78.0% | 24.2% |
| 3822360 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.63 | 45.0 | 3.12e-01 | 76.0% | 27.6% |
| 3338362 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.63 | 45.0 | 3.18e-01 | 76.0% | 30.0% |
| 3828676 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.63 | 44.0 | 3.59e-01 | 76.0% | 44.8% |
| 4058767 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.62 | 49.0 | 3.73e-01 | 94.0% | 77.9% |
| 4558680 | 101.1.2.807 ↗ | alpha arrays › HTH › HTH › winged helix domain › MC6 | 0.61 | 45.0 | 3.85e-01 | 78.0% | 73.8% |
| None | — | 0.61 | 44.0 | 2.81e-01 | 76.0% | 83.3% | |
| 4975863 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.60 | 42.0 | 3.59e-01 | 74.0% | 57.5% |
| 3739404 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.59 | 50.0 | 3.23e-01 | 98.0% | 50.6% |
| 3265774 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.58 | 48.0 | 3.27e-01 | 100.0% | 35.2% |
| 3257744 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 3.29e-01 | 100.0% | 35.2% |
| 4150431 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.57 | 46.0 | 2.89e-01 | 90.0% | 16.3% |
| 4348494 | 375.1.1.46 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g | 0.56 | 42.0 | 2.55e-01 | 82.0% | 92.5% |
| 4971104 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 43.0 | 2.69e-01 | 96.0% | 15.3% |
| 5077968 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.55 | 45.0 | 3.43e-01 | 92.0% | 39.2% |
| 552 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.54 | 44.0 | 3.45e-01 | 92.0% | 89.0% |
| 4992984 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.53 | 41.0 | 2.53e-01 | 96.0% | 12.9% |
| 4205890 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 41.0 | 2.44e-01 | 100.0% | 43.4% |
| 5036086 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 45.0 | 3.84e-01 | 100.0% | 67.5% |
| 4983607 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.50 | 40.0 | 2.42e-01 | 98.0% | 64.5% |
D2
medium
residues 61-134
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.68 | 49.0 | 3.55e-01 | 77.0% | 41.6% |
| 3u7iA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 47.0 | 3.28e-01 | 90.5% | 34.4% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 39.0 | 3.45e-01 | 79.7% | 70.1% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 48.0 | 4.69e-01 | 100.0% | 96.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3337263 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.64 | 47.0 | 4.43e-01 | 78.4% | 82.2% |
| 4021738 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.61 | 54.0 | 3.36e-01 | 100.0% | 58.4% |
| 4192313 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.55 | 42.0 | 3.33e-01 | 83.8% | 69.1% |
| 3173959 | 109.4.1.357 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd | 0.55 | 43.0 | 3.22e-01 | 93.2% | 100.0% |
| 3471868 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.50 | 35.0 | 3.06e-01 | 71.6% | 92.2% |